Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k08
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical...    49   4e-06
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        41   0.001
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    41   0.001
Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical pr...    38   0.007
AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical ...    38   0.007
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    37   0.017
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    35   0.052
Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...    35   0.052
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    28   7.9  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    28   7.9  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    28   7.9  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    28   7.9  
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    28   7.9  
AB162903-1|BAD32699.1|  159|Caenorhabditis elegans Rim protein.        28   7.9  

>AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.1 protein.
          Length = 766

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 432 AIKGRRMHMEDRFIINENVNNTGI---SLFAIFDGHGGEFAANYAKDHLIQNL 581
           A +G R +MEDR +I+    N G+   +   +FDGHGGE A+ Y + HL+ N+
Sbjct: 25  ASQGGRRYMEDRCVIHTERINNGLLDWTFVGVFDGHGGEHASEYVRRHLLMNI 77


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 435 IKGRRMHMEDRFII--NENVNNTG---ISLFAIFDGHGGEFAANYAKDHL 569
           +KG+R   EDRF+   N    + G   IS+ A+FDGHGG   + YA  HL
Sbjct: 168 LKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHL 217


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 435 IKGRRMHMEDRFII--NENVNNTG---ISLFAIFDGHGGEFAANYAKDHL 569
           +KG+R   EDRF+   N    + G   IS+ A+FDGHGG   + YA  HL
Sbjct: 168 LKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHL 217


>Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +3

Query: 378 SDADKQSWELKGTLSAAYAIKGRRMHMEDRFII-------NENVNNTGISLFAIFDGHGG 536
           S   K+S  L  TL+A    KG R  M+D  I+        E    +  S FAIFDGH G
Sbjct: 20  SKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAG 79

Query: 537 EFAANYAKDHLIQNLYNKIVELNAF 611
             AA + +  + + +  K+ + + F
Sbjct: 80  PRAAEHCQSQMGKTVKEKLAKFSDF 104


>AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +3

Query: 378 SDADKQSWELKGTLSAAYAIKGRRMHMEDRFII-------NENVNNTGISLFAIFDGHGG 536
           S   K+S  L  TL+A    KG R  M+D  I+        E    +  S FAIFDGH G
Sbjct: 20  SKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAG 79

Query: 537 EFAANYAKDHLIQNLYNKIVELNAF 611
             AA + +  + + +  K+ + + F
Sbjct: 80  PRAAEHCQSQMGKTVKEKLAKFSDF 104


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +3

Query: 417 LSAAYAIKGRRMHMEDRFI-INENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKI 593
           L  +  ++G R+ MED    +    ++   + FA++DGHGG   + Y+      NL+ K+
Sbjct: 23  LVGSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYSG----INLHKKV 78

Query: 594 VELNAFKEGKISD-ISREIIEEYAPKEENVERKTSFKKSVSTA 719
           V    F EG + + I +  +E    ++  V+ +T    S +TA
Sbjct: 79  VAQKEFSEGNMKEAIEKGFLE--LDQQMRVDEETKDDVSGTTA 119


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 432 AIKGRRMHMEDRFIINENVNNTGI----SLFAIFDGHGGEFAANYAKDHLIQNL 581
           +++G R+ MED  I    ++ +      S FA+FDGH G   AN A   L+++L
Sbjct: 10  SMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHL 63


>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 432 AIKGRRMHMEDRFIINENVNNTGI----SLFAIFDGHGGEFAANYAKDHLIQNL 581
           +++G R+ MED  I    ++ +      S FA+FDGH G   AN A   L+++L
Sbjct: 111 SMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHL 164


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 701 FEACFTFNIFLFRCILLNNFSRYIRYFTFFESVKFNNFV 585
           F  CFTF +    C+L+  F+  + +F+F   VKF  F+
Sbjct: 5   FMLCFTFIVLFQSCLLVGFFNTIVFFFSF--QVKFFRFI 41


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 138  FVKILSRFTSSTFLDAPVSYLW 203
            FVK++S+F SST  D  V +LW
Sbjct: 1672 FVKMISKFLSSTVGDLTVEFLW 1693


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 612 KEGKISDISREIIEEYAPKEENV-ERKTSFKKSVSTADD 725
           +E K + IS++  EE +  ++ + ERK + KK V T DD
Sbjct: 31  EEAKETQISQKASEELSELDKQITERKETSKKLVGTQDD 69


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 612 KEGKISDISREIIEEYAPKEENV-ERKTSFKKSVSTADD 725
           +E K + IS++  EE +  ++ + ERK + KK V T DD
Sbjct: 31  EEAKETQISQKASEELSELDKQITERKETSKKLVGTQDD 69


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 612 KEGKISDISREIIEEYAPKEENV-ERKTSFKKSVSTADD 725
           +E K + IS++  EE +  ++ + ERK + KK V T DD
Sbjct: 31  EEAKETQISQKASEELSELDKQITERKETSKKLVGTQDD 69


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 213 RLYFLRSEVVVITLAIVIFLMYLQSIEL----WSRTMLSRLSQAMNPMSAVQRMKLMEGS 380
           R+  LR    VIT +  + ++YL + EL    W R MLS+L+     + AVQ  +  + +
Sbjct: 465 RVRVLRDNGDVITDSGTVGMVYLGNEELVVLSWQRKMLSKLNTRGEILKAVQFSEFYQPT 524

Query: 381 D 383
           D
Sbjct: 525 D 525


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 558 KDHLIQNLYNKIVELNAFKEGKISDISREIIEEYAPKEENVERKTSFKK 704
           K+ L +N+YN     N FKE  I +  ++  E     EE+++RK    K
Sbjct: 509 KEFLERNMYNAAKNFNEFKE-SIENREKKEAEARKKVEESLKRKLDSSK 556


>AB162903-1|BAD32699.1|  159|Caenorhabditis elegans Rim protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 612 KEGKISDISREIIEEYAPKEENV-ERKTSFKKSVSTADD 725
           +E K + IS++  EE +  ++ + ERK + KK V T DD
Sbjct: 31  EEAKETQISQKASEELSELDKQITERKETSKKLVGTQDD 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,532
Number of Sequences: 27780
Number of extensions: 295135
Number of successful extensions: 846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)