Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k05
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    38   0.004
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    38   0.004
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    27   7.5  
AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
 Frame = +2

Query: 362 EEIKQNIXIRKGVGDIDRVMQLXKIITKTSE----------DNHEYERIKQDLYEALSIL 511
           E I++NI  RKGVGDID+V +   +I K  +             +Y+++  +LY+   ++
Sbjct: 57  EAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKYKQLWDELYDEAILI 116

Query: 512 PNKTHPFVE--GKFEPHIVHEINKKKD 586
           PN T   V    + +  IV E  +K++
Sbjct: 117 PNMTQDGVPRGSEDQAKIVAEWGEKRE 143


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
 Frame = +2

Query: 362 EEIKQNIXIRKGVGDIDRVMQLXKIITKTSE----------DNHEYERIKQDLYEALSIL 511
           E I++NI  RKGVGDID+V +   +I K  +             +Y+++  +LY+   ++
Sbjct: 57  EAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKYKQLWDELYDEAILI 116

Query: 512 PNKTHPFVE--GKFEPHIVHEINKKKD 586
           PN T   V    + +  IV E  +K++
Sbjct: 117 PNMTQDGVPRGSEDQAKIVAEWGEKRE 143


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 386 IRKGVGDIDRVMQLXKIITKTSEDNHEYERIKQD 487
           IR+   D  RVM++ K I    EDN  YE + +D
Sbjct: 282 IRRAKDDDQRVMEV-KFIATLQEDNKRYELLAKD 314


>AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical
           protein Y57A10C.10 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 128 HTTLN*VXXFFICLLVPSFKLSLXKS-LDWXYFTSVKMLYISSLIQN 265
           HTT   +     CL +PS  +SL ++ + +  F     +Y +SL+ N
Sbjct: 188 HTTCGILLSSLFCLTIPSLLISLVETFVGFSIFDQFGPIYAASLLTN 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,743
Number of Sequences: 27780
Number of extensions: 141644
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)