Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k04
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...   108   6e-25
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.46 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   2.5  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.7  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   5.7  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   5.7  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   7.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.6  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.6  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   10.0 

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score =  108 bits (260), Expect = 6e-25
 Identities = 47/115 (40%), Positives = 74/115 (64%)
 Frame = +1

Query: 202 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 381
           SR ++LAW+N        +IE+   G A  Q  D ++   +P+K++ F+ N E++YI N+
Sbjct: 4   SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62

Query: 382 KILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQR 546
           K+LQ  F K G+DK+V  ++L + + QDN EF+QW K+F+D  Y G  YDA+A+R
Sbjct: 63  KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARR 117


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 325 PMKRIKFKTNLEHEYIQNFKILQAGFK 405
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 20  SKKNEVSVLDKNSNKFDNLSHTANLFR 100
           + +NE + + K SN  DNL+ ++ LFR
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFR 289


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/37 (24%), Positives = 25/37 (67%)
 Frame = +3

Query: 186 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 296
           Y++  ++  ++S+ +  SP+ + E+++ ++R  +LPV
Sbjct: 58  YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 340 KFKTNLEHEYIQNFKILQAGFK 405
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 342 FDSFHWYTAREQHVHELAIGGTCTQLF 262
           FD   WYT R + +  L+I     QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 72  LSNLLEFLSKTLTSFFFDHHIHFL 1
           L+NLLE L ++   +F   H+HF+
Sbjct: 345 LNNLLEHLHQSFFFYFILDHLHFI 368


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 170 TFTAIFTMYQPLMKKFLTV 114
           TF A FT Y PL+ +FL V
Sbjct: 45  TFMAPFTPYMPLLGRFLIV 63


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 403
           ++Q   S LR I N+N+Y+   + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = -2

Query: 542 CATASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTILSTPIFLKPACNIL---KFC 372
           C+T +    P +  +  L      K  WK     +     +ST +  KP C++    +F 
Sbjct: 228 CSTHTGTKKPYIFKETRLLGNNEHKSGWKEDGDRIIFEIPISTSLLSKPICDVSFDGQFS 287

Query: 371 IYSCSKFVLNLIL 333
           +Y   + +L  I+
Sbjct: 288 LYIAHQLILETIV 300


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 549 FSLRHCVICRTSIVGVKEFLEPLQKLKIILETTL-HQFVNGYYLVHTH 409
           FS +  + C++ + G  E    L  L  I +    HQF +GY+ +H H
Sbjct: 37  FSPKEEINCQSLLQG-PELKTALDNLNFIHKQKFEHQFRHGYWKLHPH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,124
Number of Sequences: 5004
Number of extensions: 61655
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)