Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k04
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...   185   3e-47
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...   132   2e-31
U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like pr...    31   0.57 
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine re...    29   3.0  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   9.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   9.2  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    27   9.2  

>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score =  185 bits (450), Expect = 3e-47
 Identities = 79/138 (57%), Positives = 108/138 (78%), Gaps = 2/138 (1%)
 Frame = +1

Query: 163 VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIK 342
           VNVY+T  +++NLSRH+ML WVNDCLQ++F KIE+L TGA YC F D LFP S+ +K++K
Sbjct: 6   VNVYTTASSADNLSRHEMLMWVNDCLQAHFTKIEQLHTGAGYCLFTDFLFPDSIQLKKVK 65

Query: 343 FKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGA 522
           + + LE +++ N+K++Q  +K +GV+K++P+DKL+KG+FQDNFEFLQWFKK FDANY G 
Sbjct: 66  WNSRLELDWLSNWKLVQTTWKNLGVEKVIPVDKLIKGKFQDNFEFLQWFKKLFDANYDGH 125

Query: 523 AYDAVAQR--EGLPMGHG 570
            YD +  R  EGLP   G
Sbjct: 126 EYDPMQARNGEGLPTEGG 143


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score =  132 bits (320), Expect = 2e-31
 Identities = 61/134 (45%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
 Frame = +1

Query: 157 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 336
           M VNV+ + VT++ LSR + +AWVN+ L+S+F K+EE+ +GAAYCQ   +LF  ++ +K+
Sbjct: 1   MVVNVFISAVTTDTLSRKEAVAWVNNLLKSHFTKVEEMASGAAYCQLTHLLF-NAINLKK 59

Query: 337 IKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANY- 513
           +KF    E + + N+K+L   +K +G+DK V ++K+ K +FQDN EFLQWF KF++AN  
Sbjct: 60  VKFNPRSEPDVLNNWKVLTTTWKDLGIDKPVDVEKMKKAKFQDNMEFLQWFYKFYNANLT 119

Query: 514 -GGAAYDAVAQREG 552
                YDAV  R G
Sbjct: 120 TEPEEYDAVGARFG 133


>U64849-4|AAC48054.2|  217|Caenorhabditis elegans Saposin-like
           protein family protein20 protein.
          Length = 217

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 573 APVPHGQTFSLRHCVICRTSIVGVKEFLEPLQKLKIILETTLHQFVN 433
           +PV    T S   C  C+++   V  FL P++K+++I +T L  FVN
Sbjct: 125 SPVVESGTLSNIICTNCQSA---VNAFLAPIKKVELITKTELTDFVN 168


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 513 IVGVKEFLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLYIFMFQICLKFDS 334
           ++G   +   L    ++ +  L  F +  YL+   +F   + YF +   +   ICLK   
Sbjct: 4   LIGNSSYFRVLTPTTVLHDHRLRGFPDNIYLIVYGIFHLLIMYFVLKCAY---ICLKIRV 60

Query: 333 FHW 325
           FHW
Sbjct: 61  FHW 63


>Z81147-8|CAB03537.1|  338|Caenorhabditis elegans Hypothetical
           protein T09E11.10 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +1

Query: 298 MDMLFPGSVPMKR-IKFKTNL---EHEYIQNFKILQAGFKK 408
           M M+F G  P K  I F +++   +HEY++ ++I  A FK+
Sbjct: 288 MTMMFMGYEPTKEPILFSSHIPLKDHEYLEQYRIQMADFKE 328


>AF045641-4|AAO91715.1|  332|Caenorhabditis elegans Hypothetical
           protein F53H1.4b protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +1

Query: 157 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 336
           +A+ VYS  V + NLS  D+L  + D +   F   E+L +       +     G + +  
Sbjct: 17  LAIEVYS-KVHNSNLSEDDLLDEIEDLIDEKFFAGEKLMSSGKEYTVVSSEKRGGLTLYT 75

Query: 337 IKFKTNLEHEYIQNFKILQA-GFKKMGVDKIVPIDK 441
           ++  T + H  ++  K L     KK+ ++    +D+
Sbjct: 76  MEDGTKIGHRDLRRKKGLSVEEIKKIAIEDAEFVDE 111


>AF045641-3|AAO91716.1|  368|Caenorhabditis elegans Hypothetical
           protein F53H1.4c protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +1

Query: 157 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 336
           +A+ VYS  V + NLS  D+L  + D +   F   E+L +       +     G + +  
Sbjct: 53  LAIEVYS-KVHNSNLSEDDLLDEIEDLIDEKFFAGEKLMSSGKEYTVVSSEKRGGLTLYT 111

Query: 337 IKFKTNLEHEYIQNFKILQA-GFKKMGVDKIVPIDK 441
           ++  T + H  ++  K L     KK+ ++    +D+
Sbjct: 112 MEDGTKIGHRDLRRKKGLSVEEIKKIAIEDAEFVDE 147


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +1

Query: 157 MAVNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKR 336
           +A+ VYS  V + NLS  D+L  + D +   F   E+L +       +     G + +  
Sbjct: 53  LAIEVYS-KVHNSNLSEDDLLDEIEDLIDEKFFAGEKLMSSGKEYTVVSSEKRGGLTLYT 111

Query: 337 IKFKTNLEHEYIQNFKILQA-GFKKMGVDKIVPIDK 441
           ++  T + H  ++  K L     KK+ ++    +D+
Sbjct: 112 MEDGTKIGHRDLRRKKGLSVEEIKKIAIEDAEFVDE 147


>AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein100 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +1

Query: 166 NVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKF 345
           N YSTN +  NLS   + +W      ++F +I  L        F  +L    V MK +K+
Sbjct: 7   NYYSTNYSKCNLSESFLASWKGVAYPTDFIQIFSL--PLQILAFYIILTKTPVQMKSMKW 64

Query: 346 KTNLEHEYIQNFKILQAGF 402
                H +   F ++   F
Sbjct: 65  PLFYNHLFCSIFDVILCTF 83


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 495 FLEPLQKLKIILETTLHQFVNGYYLVHTHLFKTSL*YFKVLY 370
           F+E L+ LK +L++ LH   N Y+L H  +   S   F +LY
Sbjct: 21  FVE-LRSLKNLLKSILHNIENDYFLAHQKVRLYSSHNFVMLY 61


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -1

Query: 642 GSSCDFGDRGDGFLSGSGPRGGRAPVP 562
           G    FG  G GF SGS P GG AP P
Sbjct: 491 GGGGGFGGGGGGFGSGS-PFGGAAPSP 516


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 561  HGQTFSLRHCVICRTSIVGVKEFLEPLQKLKI 466
            HG TF   HC +C T    V+EF E  +K  +
Sbjct: 2131 HGNTF---HCNLCTTGTKTVEEFAEHCRKAHV 2159


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 561  HGQTFSLRHCVICRTSIVGVKEFLEPLQKLKI 466
            HG TF   HC +C T    V+EF E  +K  +
Sbjct: 2131 HGNTF---HCNLCTTGTKTVEEFAEHCRKAHV 2159


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +1

Query: 166 NVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKF 345
           N YSTN +  NLS   + +W      ++  +I  L        F  +L    V MK +K+
Sbjct: 7   NYYSTNYSKCNLSESFLASWKGVAYPTDIIQIFSL--PLQILAFFIILAKSPVQMKSMKW 64

Query: 346 KTNLEHEYIQNFKILQAGF 402
                H +   F ++   F
Sbjct: 65  PLFYNHLFCSIFDLILCTF 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,700
Number of Sequences: 27780
Number of extensions: 354323
Number of successful extensions: 998
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)