Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26k03
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 0.99
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 1.3
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 24 5.3
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 7.0
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c... 24 7.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 7.0
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 23 9.2
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 23 9.2
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 23 9.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 23 9.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 23 9.2
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 0.99
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 3 LLIISPMNSFKSPKELNREIQKL--ENNKYTTSDVLVGKAMDFIYSNKTVMGLLARELWN 176
LL + + +P++L +KL + K SDV++ F+ N V+G L LW
Sbjct: 271 LLFLGRAVNILAPRQLGVLTEKLTKHSEKIPWSDVILFVIYRFLQGNMGVIGSLRSFLWV 330
Query: 177 LGSSAIDRIVEMKGRKNKNQ*SIPLHATR 263
S R + K ++ S H +
Sbjct: 331 PVSQYAYRAISTKALRHVLNLSYDFHLNK 359
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 1.3
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 33 KSPKELNREIQKLENNKYTTS--DVLVG--KAMDFIYSNKTVMGLLARELWNLGSSAIDR 200
KS +E+++++ ++ S D + K ++F+ SNK +GL R++ G + + R
Sbjct: 200 KSSEEISKDMGSYNLPRFLASLIDASLNDTKEIEFVTSNKEELGLEGRDMSTSGINQLSR 259
Query: 201 IVEMK 215
+ ++
Sbjct: 260 LARVE 264
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 27 SFKSPKELNREIQKLENNKYTTSDVLVGKAMDFI---YSNKTVM 149
S +E++R + + N Y D+L G ++D I Y K++M
Sbjct: 14 SLNRGREIDRILSSFKLNAYDVLDILPGMSVDDIRNLYRKKSLM 57
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 23.8 bits (49), Expect = 7.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 268 CSLVACNGMLHW 233
C+L+ C GMLH+
Sbjct: 154 CALILCKGMLHF 165
>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 143
Score = 23.8 bits (49), Expect = 7.0
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 239 KHSIACDKRAIRVIYYF 289
KH+ C ++ +R++Y+F
Sbjct: 62 KHTCRCFQQVVRIVYWF 78
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 138 KTVMGLLARELWNLGSSAIDRIVEM 212
K + +++R WNL ID I+E+
Sbjct: 334 KGLAKIISRLPWNLAEQVIDAIIEL 358
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 117 LPSQPKHPKLCIYCSLASE 61
LP + K+C +CSL SE
Sbjct: 670 LPEMISNRKICDHCSLVSE 688
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 23.4 bits (48), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 287 NNILH-GLLSCRMQWNASLVFIFSAFHLNNP 198
+ I+H G SC + NA L+F+ SA L P
Sbjct: 100 SGIIHLGATSCFVTDNADLIFLRSAMDLLIP 130
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Frame = -2
Query: 114 PSQPK---HPKLCIYCSLAS 64
PSQP+ P LCI CSL +
Sbjct: 7 PSQPESQAQPNLCIPCSLGT 26
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 30 FKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNK 140
FK+ ++ ++ I+ L + TS + V +A+D+ +N+
Sbjct: 53 FKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANE 89
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 81 KYTTSDVLVGKAMDF--IYSNKTVMGLLARELWNLGSSAIDRIVEM 212
+Y S V +DF + KT+ LA+++W + ++ V+M
Sbjct: 60 EYGDSGVSESWVLDFLSVTGEKTISEFLAQKIWKTSNGDLNVAVDM 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,436
Number of Sequences: 5004
Number of extensions: 20124
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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