Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26k03
         (334 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014135-150|AAN06593.1| 3183|Drosophila melanogaster CG2999-PB,...    27   4.4  
U02279-1|AAA18301.1|  964|Drosophila melanogaster protein ( Dros...    27   5.9  
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ...    27   5.9  
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ...    27   5.9  
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ...    27   5.9  
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ...    27   5.9  
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever...    27   7.8  

>AE014135-150|AAN06593.1| 3183|Drosophila melanogaster CG2999-PB,
           isoform B protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +3

Query: 42  KELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLLARELWNLGSSAIDRIVEMKGR 221
           + LN+E +K    K+ T+++ +   +  I +      ++ R++  LGS   D  V+    
Sbjct: 535 QHLNKEPRKHRKKKHHTNEMDMINKLKCILAQAQSTEIIKRDIEELGSKLSDACVKQTET 594

Query: 222 KNKN 233
           +NK+
Sbjct: 595 ENKS 598


>U02279-1|AAA18301.1|  964|Drosophila melanogaster protein (
           Drosophila melanogastertelomere-associated transposons
           TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
           cds. ).
          Length = 964

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 359 NPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLIL 406


>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 475 NPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLIL 522


>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 475 NPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLIL 522


>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
           protein.
          Length = 1042

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 437 NPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLIL 484


>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
           protein.
          Length = 1080

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 475 NPCNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLIL 522


>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
           transcriptase protein.
          Length = 1084

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 15  SPMNSFKSPKELNREIQKLENNKYTTSDVLVGKAMDFIYSNKTVMGLL 158
           +P N   + KELN EI+ L+N+K    D++  + +  + +  T+  +L
Sbjct: 475 NPHNQPITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLIL 522


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,652
Number of Sequences: 53049
Number of extensions: 203033
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 735339255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)