Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26j20
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 77 2e-15
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 76 6e-15
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 30 0.29
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.29
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 30 0.39
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 1.2
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 3.6
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 8.3
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 8.3
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 8.3
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.3
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +2
Query: 38 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 193
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 536 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 631
+L +PRP M +C+LGD D AK V M
Sbjct: 53 KLPNVPRPNMSICILGDAHDLDRAKHGGVDAM 84
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +2
Query: 38 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 193
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 536 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 631
+L +PRP M +C+LGD D AK V M
Sbjct: 53 KLPNVPRPNMAICILGDAHDLDRAKHGGVDAM 84
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 32 MSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 190
+SSK+ +D L V +L KK +N+L + L + N P +K ++ TV
Sbjct: 73 ISSKIPQDKLKSTVENLLSGVAGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTV 126
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 20 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 184
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 29.9 bits (64), Expect = 0.39
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -3
Query: 325 PAHYLKTLGQVPSVCTDSLYRFILVEF**KINNIPLKCSFQVNVLYSA--GETLVLLWVI 152
P Y + G +P+ L+R +++ F + N S ++ + G L LW I
Sbjct: 1134 PPFYRQKPGSIPAFSKSLLHRKVVICFLISVINQNFWMSTLISQAWRFFWGSKLTKLWKI 1193
Query: 151 VLQTNLKLYSLQKVTFLVLRGLKN 80
V+ T L + F VLR L N
Sbjct: 1194 VVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 449 ILTKLNTDCILNILKHKIFHFNIYDLILFRLKYIPRP 559
IL + N C+L + HK F+ +Y + LF RP
Sbjct: 111 ILNQDNIQCLLQSISHKDFYVRLYSVELFSAILSCRP 147
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 212 LLSGKRTLQCRRNAC 168
LLSG+ +L CR NAC
Sbjct: 153 LLSGQHSLSCRMNAC 167
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 110 NFLETVELQIGLKNYDPQKDKRFSGTVKYVYLKGAF*WNVIYFLLKFHQNESVQGV 277
NFL + + L Y+ + +Y Y + + I+F L F N S G+
Sbjct: 384 NFLTFLHIYPQLSIYNLELQLGIEKEYQYPYFESIMWYTAIHFYLAFPDNSSRDGI 439
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 29 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 127
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 691 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 590
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 71 VNAVLQSSKDKKRNFLETV 127
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 223 PLKCSFQVNVLYSAGETLVLLWVIVLQTNLKLYSLQKVTF--LVLRGLKNGIHALV 62
P+KCS QVN YS ++ +++ ++ Y QK+ L+L N + +LV
Sbjct: 121 PIKCSNQVNTQYSVSFLFTIMASVLI--SVLNYISQKIFLNGLILGNSHNVVTSLV 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,818
Number of Sequences: 5004
Number of extensions: 62120
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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