Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j20
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    77   1e-14
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    49   4e-06
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    33   0.21 
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +2

Query: 38  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 205
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++  ++
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHI 57



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 536 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 631
           RLK+IPRP M+VCV GDQ H DEA   ++P M
Sbjct: 53  RLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSM 84


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 536 RLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 631
           RLK+IPRP M+VCV GDQ H DEA   ++P M
Sbjct: 23  RLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSM 54



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 146 KNYDPQKDKRFSGTVKYVYL 205
           KNYDPQKDKRFSG+++  ++
Sbjct: 8   KNYDPQKDKRFSGSIRLKHI 27


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 563 MQVCVLGDQQHCDEAKTLNVPCM 631
           M+VCV GDQ H DEA   ++P M
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSM 23


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 413 TNDDLKCMYYLLILTKLNTDCILNILKHKIFHFNIYDLILFRLKY-IPRP 559
           T+ D+  MY++L L  L+++  +NIL + +F   I  L LF  K+ IP P
Sbjct: 55  THLDMITMYFVLFLNILHSNWSINIL-YSVFSLTIV-LYLFFCKFLIPNP 102


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 8   IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 175
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,136
Number of Sequences: 27780
Number of extensions: 346796
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)