Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j18
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   1.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    24   2.4  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    24   3.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   3.2  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   3.2  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    23   4.2  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   4.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    23   5.5  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    23   7.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.3  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    22   9.7  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    22   9.7  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    22   9.7  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    22   9.7  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    22   9.7  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 77  FFYCPETVFWKDLF 118
           F  CP   FWK LF
Sbjct: 420 FHVCPSVTFWKTLF 433


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 167 NSNEISN--DIQFTLYDNKINLSKTQFRDSKKI 75
           NSN+ +   + + ++YD+  ++SK+Q    KKI
Sbjct: 50  NSNKTTEGEEAKLSIYDSSHSISKSQLESVKKI 82


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 50  YLWDFCLYRFFYCPETVF 103
           YL+  CLYR  Y P  ++
Sbjct: 151 YLFAMCLYRGLYIPHWIY 168


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 110 DLFYCHIT*IVCRLRSHLNF 169
           DL + H   ++C + SH NF
Sbjct: 533 DLLHLHAYPVICSVSSHTNF 552


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 70  VPIFLLSRNCVLERFILLSYNVNCMSFEIS 159
           VP+++L R CV+ +F   S  +  +   I+
Sbjct: 14  VPVYILLRKCVIYKFAYSSRKIESVHCAIT 43


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 200 FFYNEKQTFY*NSNEISNDIQFTLYDNK 117
           F YN K+ F+     + ND++  L D K
Sbjct: 199 FEYNTKRVFFMTPQTLQNDLKEHLLDAK 226


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 64  LFVPIFLLSRNCVLERFILLSYNVNCM 144
           LF+ IFL   NC +   IL S N + M
Sbjct: 206 LFLMIFLTLWNCFIPYSILFSMNWSAM 232


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 37  ILMYVPMGFLFVPIFL 84
           +L+YVP+ F+FV  FL
Sbjct: 283 LLIYVPLFFIFVYSFL 298


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  CMYLWDFCLYRFFYCPETVFWKDLFYCHIT*IV 142
           C + ++FC  +FF   +   ++ LF    T I+
Sbjct: 207 CFFTFEFCKQKFFSNADLTAFQKLFLGGFTGII 239


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 75  DFFTVPKLCFGKIYFIVI 128
           DF   P+LCF  +YF +I
Sbjct: 443 DFGQSPELCFLCLYFFLI 460


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 49  VPMGFLFVPIFLLSRNCV 102
           VP+  + +PIFLL R C+
Sbjct: 65  VPLNVMLLPIFLLCR-CI 81


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   LRDIXLSMFVHSNVCTYGIFVC 71
           L D  +  F+H+  CT  +F C
Sbjct: 239 LSDAPIVFFLHAPFCTSEVFRC 260


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +3

Query: 63  FVCTDFFTVPKLCFGKIYF 119
           ++C+ ++  P+L FG  ++
Sbjct: 185 YICSRYYRAPELVFGATHY 203


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 187 KNKHFIKIQMRSQTTY 140
           KNK F++++   QTTY
Sbjct: 271 KNKSFLRLKQVVQTTY 286


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 191 NEKQTF-Y*NSNEISNDIQFTLYDNKINLSKTQFRDSKKIGTNKN 60
           N +Q F Y    +  N++       ++N+S++ F+D +K+   +N
Sbjct: 242 NVEQAFRYTEPTQCPNELCANKRSWRLNISQSSFQDWQKVRIQEN 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,620
Number of Sequences: 5004
Number of extensions: 14716
Number of successful extensions: 51
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)