Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j18
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054     30   0.30 
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411...    26   4.8  
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    25   6.4  
07_01_0225 - 1650665-1652743                                           25   8.4  
02_05_0734 + 31318380-31318610,31319422-31319988                       25   8.4  

>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
          Length = 995

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 155 ISNDIQFTLYDNKINLSKTQFRDSKKIG-TNKNPIGTYIRMDEHTQXNIS 9
           + ND QF  YD+++ +  +Q  D KKIG T  + +      +E+T+ NI+
Sbjct: 93  VFNDTQFRGYDHRVWVYVSQVFDLKKIGNTIISQVSNEGNKNEYTRENIN 142


>01_06_0352 +
           28638453-28639391,28639486-28640034,28640388-28641195,
           28641279-28641389,28641556-28641683
          Length = 844

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 95  FRDSKKIGTNKNPIGTYIRMDE 30
           +R  + +GT + PIG Y+ +DE
Sbjct: 171 WRVPRSVGTQEAPIGDYVDLDE 192


>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 6   LRDIXLSMFVHSNVCTYGIFVCTDFFTVPK 95
           +R I     VHSN   +GI   TD   VPK
Sbjct: 364 IRSIAAFKDVHSNTGIFGIHTSTDAAFVPK 393


>07_01_0225 - 1650665-1652743
          Length = 692

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  LFVPIFLLSRNCVLERFILLSYNVNCMSF 150
           LFV +   S       F+L+S+ +NC SF
Sbjct: 14  LFVQVRQTSHTKFFFLFLLVSFGINCASF 42


>02_05_0734 + 31318380-31318610,31319422-31319988
          Length = 265

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 167 NSNEISNDIQFTLYDNKINLSKTQF 93
           N+N   +DI   LY NK N S+  F
Sbjct: 202 NNNSAYHDIHHQLYGNKYNFSQPFF 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,510,832
Number of Sequences: 37544
Number of extensions: 69305
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)