Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26j14
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 38 0.001
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 30 0.29
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.66
SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr... 28 1.2
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.7
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 3.5
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 4.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 4.7
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.2
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 6.2
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 6.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.2
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 8.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.1
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +1
Query: 202 IEIFEKLDFMY-DFNIQGQDIKHVMNFFEMQYSGNILEDINKLQN-IQFEITSKENKISE 375
+E+ EK+ + D IQ Q +++ ++ + S + E I L++ + E+ ++E
Sbjct: 550 LELREKVRALECDVEIQKQTVQYQISNAVKENSNTLSEQIKNLESELNSSKIKNESLLNE 609
Query: 376 QTFMHKILNLLPEKFNTFKSIWNNIDVEKKNLDELTRRIKNELEFIKEDSIIESREILKG 555
+ + ++L + S NID + K++DE TR ++ E + + + K
Sbjct: 610 RNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKR 669
Query: 556 NE 561
N+
Sbjct: 670 NQ 671
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 283 EMQYSGNILEDINKLQNIQFEITSKENKISE-QTFMHKILNLLPEKFNTFKSIWNNIDVE 459
E++Y +LE++ ++++ E+T NK+++ ++ K+ + + +T K + + +D
Sbjct: 1302 EVEYQ-KVLEEVKTTRSLRSEVTLLRNKVADHESIRSKLSEVEMKLVDTRKELNSALDSC 1360
Query: 460 KKNLDELTRRIKNELEFIKEDSI 528
KK E+ R+K KE++I
Sbjct: 1361 KKREAEI-HRLKEHRPSGKENNI 1382
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 0.66
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +1
Query: 130 KGKFIIFSYIEEKYLHYVINLETIIEIFEKLDFMYDFNIQGQDIKHVMNFFEMQYSGNIL 309
K K + + +E++ Y +N+ + + ++ + + VMN F QY N L
Sbjct: 541 KEKDRLINELEQRIKSYEVNVSELNGTID--EYRNKLKDKEETYNEVMNAF--QYKDNDL 596
Query: 310 ----EDINKLQNIQFEITSK-ENKISEQTFMHKILNLLPEKFNTFKSI--WNNIDVEKKN 468
E INKLQ+ + E+TS E K + + + + +L ++ + K N D++ N
Sbjct: 597 RRFHESINKLQDREKELTSNLEKKNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTN 656
Query: 469 LDEL 480
L E+
Sbjct: 657 LMEI 660
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Frame = +1
Query: 307 LEDINKLQNIQFEITSKENK----ISEQT-FMHKILNLLPEKFNTFKS----IWNNIDVE 459
L+D K +N+ + S NK + E+ ++ + ++L ++ +++S NN+ +
Sbjct: 937 LQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQD 996
Query: 460 KKNLDELTRRIKNELEFIKEDSIIESREILKGN 558
K L+E + I+ ELE + + ++ E++ N
Sbjct: 997 KNELEERLKEIQKELE-VYNNHFMKQAELMTSN 1028
>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 551 FKISRDSMIESSLMNSNSFLILRVNSSKFFFSTSILFQID 432
F I + +I SL+ + S L+ +S+F FSTS+ ++D
Sbjct: 2 FSILKQGVISKSLLAATS---LKATASRFSFSTSVASRVD 38
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 460 KKNLDELTRRIKNELEFIKEDSII 531
KKN++E RIK+++E + +D+I+
Sbjct: 776 KKNVEETAARIKSQIEALIDDTIL 799
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 439 WNNIDVEKKNLDELTRRIKNELEFIKEDSIIESRE 543
W++ D K+ + + R++ + + + EDSI E ++
Sbjct: 690 WHSPDFTSKSFEPIERKLPSRISEVTEDSIDEDKQ 724
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 67 KLLLDTKGIKIDDKNEEKLENKGKFIIFSYIEEKY-LHYVINLETIIEIFEKL 222
+L D K KN+ +LE G +F++ +EK L+ V+N + FE+L
Sbjct: 155 QLFTDYTVKKKSKKNKSQLEENGLNHLFTFQDEKITLNSVVNSISYSSFFEEL 207
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 25 FTNKDNYKAWRKLIKLLLDTKGIKID 102
FT K NY RKL + LL KG + D
Sbjct: 261 FTEKPNYAYLRKLFRDLLIRKGYQYD 286
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 412 EKFNTFKSIWNNIDVEKKNLDELTRRIKNELEFIKEDSIIESREI 546
EK + +I NN + EK+ + +R+KNELE + + ++ ++
Sbjct: 64 EKESLLDAIKNN-EYEKQRDNNTIKRLKNELELYQNECQLQLNKV 107
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = -2
Query: 497 FLILRVNSSKFFFSTSILFQIDLKVLNFSGNKFKILCINVCSEILFSLLVISNCIFCNLF 318
F + +N + F ++F + ++NF ++ IN+ S I+ L ++ +F N+F
Sbjct: 1405 FGMKELNDNNIFAYGQLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLF-NIF 1463
Query: 317 ISSNMFPE 294
IS + +P+
Sbjct: 1464 ISEH-YPD 1470
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 100 DDKNEEKLENKGKFIIFSYIEEKYLHY--VINLETIIEIFEKLDFMYD 237
DD++ KL K KF++F E ++ Y V + I I+ + YD
Sbjct: 299 DDEDRPKLSWKHKFLLFFLAEVAFIAYFTVNGYQASISIYTGKLYNYD 346
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 472 DELTRRIKNELEFIKEDSIIESREIL 549
D+ IK +++F+K+DS+ +R L
Sbjct: 192 DQEVEAIKQKIQFVKQDSLSSTRNAL 217
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 430 KSIWNNIDVEKKNLDELTRRIKNELEFIKEDSIIESREI 546
K I +N+ +KK++D+L + ++ ++E S E EI
Sbjct: 19 KVINSNVPTDKKSIDQLQENVTSKSHLLEESS-SEDEEI 56
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 268 VMNFFEMQYSGNILEDINKLQNIQFEITSKENKISEQTFMHKILNLLPEKFNTFKSIWNN 447
V NFF+ I +++NKL Q E ++E FM+ + L F + S +
Sbjct: 2940 VSNFFDQNDWAEIKKNLNKLNEFQPLKFDSEESVTE-IFMNNVFQNLCVVFYVYTSA--D 2996
Query: 448 IDVEKKNL 471
+D + +L
Sbjct: 2997 VDFQTNSL 3004
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 127 FPIFPHFYRLFLYPLYPAI 71
F I PH F+YP+YP +
Sbjct: 324 FIIQPHKEERFMYPIYPVL 342
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 476 N*PEELKMNWNSSKKTLS*NLEKF*KETKRDV 571
N PE +M W + KK+++ + K K RD+
Sbjct: 111 NTPEYQRMQWEALKKSINGLINKVNKSNIRDI 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,198
Number of Sequences: 5004
Number of extensions: 45196
Number of successful extensions: 204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -