Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26j10
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 33 0.062
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.082
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 31 0.14
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 31 0.19
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 28 1.8
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 28 1.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 27 3.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 3.1
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 26 5.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 7.1
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.1
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 7.1
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 32.7 bits (71), Expect = 0.062
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 421 FPKIFRKILEMIFRHFIRTVFRRTYCTEY 507
FPK FRK+++ IFR R ++ YC+ +
Sbjct: 138 FPKNFRKVIQQIFRRLFR-IYAHIYCSHF 165
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 32.3 bits (70), Expect = 0.082
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 122 KKFIKLIAKWPLDVTKGDRDLGKFIRDRVKFVFESPEKHNLDSEYCNRQYQALNRLADNH 301
+K K +A WP D + K + ++ + + + N+Q ALN L DN
Sbjct: 5 QKITKAVALWPKDELRPWLSFPKTLDTSIRARLQK-----MPPQQANKQLNALNNLLDNV 59
Query: 302 YRNKY 316
Y NKY
Sbjct: 60 YWNKY 64
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 646 KLITLDRDPVAYEKAKNLAKEYPNRVIPLLG 738
KLI + P + + LAKEYP +VIP G
Sbjct: 28 KLIVMGTRPTDQKYVEQLAKEYPGKVIPSFG 58
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 559 LKPQDGELYVDMTFGAGGHSRKILESANCKLITLDRDPVAYEKAKNLA--KEYPNRVIPL 732
+KP G +D+ G GG +R+I E C L+ L+ + + N A + + + +
Sbjct: 122 IKP--GSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFV 179
Query: 733 LGRFSELP 756
G F +P
Sbjct: 180 KGDFMHMP 187
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 TYCTEYVKYKDHTPVM-LNEALKYLKPQDGELYVDMTFGAGGHSRKI 627
TY E+ K T V L + +K ++VD+T+GAGG S ++
Sbjct: 17 TYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSEL 63
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 158 DVTKGDRDLGKFIRDRVKFVFESPEKHNLDSEYCNRQY 271
++ +G+R + + DR + S +HN DS+ NR Y
Sbjct: 395 EIIQGNRTIQESNNDRDESTVASIHRHNFDSDSINRLY 432
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 ADNHYRNKYKRTKSSTATG-LSTEECNLILSNEVLAYLKEQ 409
+++H +N SST+ G + E CN + +NE L KE+
Sbjct: 558 SNDHSKNNLPSDSSSTSLGKVKLELCNSLETNEELIITKEK 598
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.1 bits (57), Expect = 3.1
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +1
Query: 502 EYVKYKDHTPVMLNEALKYLKPQDGELYVDMTFGAGGHSRKILESANCKLITLDRDPVAY 681
EY + V+L YL+PQ+ EL + + + K L+ + T D +
Sbjct: 950 EYSSIAGLSLVILPPLFPYLEPQEAELVIQIFDFISSDTHKCLQGLKWAIPT-SLDSACF 1008
Query: 682 E-KAKNLAKEYPNRVIPLLGRFSELPSLLKLMKLHNLP 792
KAK + N +SEL S++K + N P
Sbjct: 1009 SLKAKEIFCSLQNEDF-----YSELQSIIKCLTNENEP 1041
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 227 PEKHNLDSEYCNRQYQAL--NRLADNHYRNKYKRTKSSTATGLSTEECNLILSNEV 388
PE NL S YC+ YQ L N AD + ++ T S + NL ++NEV
Sbjct: 262 PEFRNLLSYYCSHNYQHLIENESADINIAHR------PLTTLFSDTDSNLAITNEV 311
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 185 GKFIRDRVKFVFESPEKHNLDSEY-C-----NRQYQALNRLADNHYRNK 313
GK +R+R++ + + E+ N+D EY C Y+ ++ L N +N+
Sbjct: 185 GKALRERLRSLADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNR 233
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 508 VKYKDHTPVMLNEALKYLKPQDGELYVDMTFGAG 609
V+Y+++ P++LN+ +KPQ+ V T GAG
Sbjct: 1231 VRYRENLPLVLNDISVNIKPQEKIGIVGRT-GAG 1263
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 231 SGDSKTNLTLSLMNLPRSLSPLVTSNGHLAMSL 133
S S T L+ + P SLSP++TS+ +A SL
Sbjct: 255 SPQSNTPLSTFRHSSPLSLSPVITSDNDVANSL 287
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 95 KYIAMTTQYKKFIKLIAKWPLDVTKGDRDLGKFIRDRVKFVFESPEKHNLD-SEYCNRQY 271
++ M QY++ AK PL+ +DLG D+ ++ P H D +C + Y
Sbjct: 237 EWFCMKCQYRR-----AKQPLETGMTAQDLGLSESDKKMYLSSLPTPHLADLILFCEKSY 291
Query: 272 QAL 280
+L
Sbjct: 292 PSL 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,777
Number of Sequences: 5004
Number of extensions: 55976
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -