Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j06
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    29   0.52 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.5  
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom...    25   8.5  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   8.5  

>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 539 NRIRKKMQWKLSLLKYRIAVNILLYLMMV 625
           NR+RKKM WK   ++  I + I++ L+++
Sbjct: 82  NRVRKKMWWKDMRMRLCIIIGIIILLVVI 110


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = -3

Query: 296  YEYFTEYGQIKCTLRLVCVNLGVKFISIVVVYVDKALKTVVNLSLRFIIM*FVHYCYLQC 117
            Y++F+EY  IK +  L   ++G+K   +V V++DK+L    +L L  + +    +    C
Sbjct: 1783 YKFFSEYS-IKASYWLH--SIGIKKNDVVAVFIDKSL-DYYSLMLGVLRIGAFFFPLEHC 1838

Query: 116  VSYFLFNQNLLGT 78
             S     +NLL T
Sbjct: 1839 SSLNFAKENLLRT 1851


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 543 LFHFYSTSNPQCTFYYIIIHSNCSSTSFKCNFAFNIPYNFFYFSLTECTLV 391
           L  FY  SNP  TF   I  S C  T+    F+++   N  YF ++   L+
Sbjct: 628 LLSFYEYSNPSATF---IDFSFCPLTTIDPAFSYS---NLVYFDISHAKLI 672


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
 Frame = -2

Query: 690 LTFIEMPSTLQAKR*SPQCCDVTIIKYNSILTAIL-YFSNDSF-----H-CIFFRILFHF 532
           L+F  +P T            + +  Y   L+ +  +F ND F     H   FF  +  +
Sbjct: 176 LSFPYLPPTPAEDEHKKPPLKIQLPPYEEALSIVSQFFMNDHFLVHIHHPASFFEKMHMY 235

Query: 531 YSTSNPQCTFYYIIIHSNCSSTSF------KCNFAFNIPYNFFYF 415
           Y T      F+++++ + C   ++        N+ ++  Y ++Y+
Sbjct: 236 YKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEYYYY 280


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 673 HFNESETLDQLPLTHPEHFS 732
           HFN  +TL +LPLT    +S
Sbjct: 927 HFNPKQTLSELPLTRFYRYS 946


>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 88

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 370 PLASRVDHHPALRLIEPVDRLLKTDM 293
           PLASRVD    L+++ P DR LK ++
Sbjct: 16  PLASRVDAERCLQVLAP-DRELKEEL 40


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 530 TVLPILNVPFITSSFTVI 477
           T LP+ N P IT+ FTV+
Sbjct: 108 TFLPLKNKPLITTKFTVL 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,075
Number of Sequences: 5004
Number of extensions: 67514
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)