Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j04
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.5  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   6.0  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   6.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   6.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   7.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.9  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = -1

Query: 662 TSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVI 483
           TS P +      + S+    S  S+S   ++ S    +S  +T L S T     +     
Sbjct: 584 TSSPSSTSLSISSSSTSSTFSSASTSSPSSISSS---ISSSSTILSSPTPSTSSLMISSS 640

Query: 482 SVLSGSRAPSITSRSRRPIAGSL 414
           S++SGS +   +S S  PI+ SL
Sbjct: 641 SIISGSSSILSSSISTIPISSSL 663


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 335 LYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCL 457
           LYF  I H  + R   +C E  +K+   +  +A   V LC+
Sbjct: 7   LYFDAIRHANQRR---WCHECTIKIFRRSFDIARHTVHLCV 44


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 665 RTSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLD 525
           + +P E+V+  +   SSPDL  +   S       G  +   PNT  D
Sbjct: 486 KLNPSESVVVASEKASSPDLSPKLLPSESQIFDEGIAVTQTPNTLED 532


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 629 GTQSSPDLGSRESSSHRL-AVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPS 453
           G+ S     + +S + +L + ++   +V KPN   D +         L  +VL   + P 
Sbjct: 94  GSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQ 153

Query: 452 ITSRSRRPIAGSL 414
           + S  R+P +G L
Sbjct: 154 LFSHGRKPWSGIL 166


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -1

Query: 593 SSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPSITSRSRRPIAGSL 414
           S S  +      RI +  NTS++ +TS+ + V  + ++ +SGS   + T  +    +G++
Sbjct: 167 SGSSNITTPYSNRITNS-NTSVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTTSGTV 225

Query: 413 RGV 405
             V
Sbjct: 226 EVV 228


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 626 TQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTS 513
           T +S    S E+S+H +   + T IV  P+TS +S T+
Sbjct: 45  TTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 470  QRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLER 619
            Q   R P+      E  +NL+  S     E Q+ Q +     HESQ  +R
Sbjct: 1423 QSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARREHESQKSDR 1472


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 425 QLADENVTLCLALGYQRVQRLPEKLQV 505
           Q  D N T    L Y++V+RLP++LQ+
Sbjct: 515 QSFDGNTTYA-QLSYKQVERLPQELQI 540


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 416 ENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQ 571
           ENL+  D  +   L L  + V  LPE +Q     L  L+K  +    + QK+
Sbjct: 48  ENLEAIDGKLGSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKE 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,936
Number of Sequences: 5004
Number of extensions: 59056
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)