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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26j01
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    59   5e-10
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    38   0.001
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    38   0.002
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    37   0.002
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    37   0.003
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    34   0.017
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    31   0.16 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    29   0.65 
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    29   0.65 
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    29   0.65 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    27   2.0  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.0  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   2.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.0  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   2.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.6  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   4.6  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   4.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   4.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   6.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.0  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
 Frame = +3

Query: 264 RSSQFSYIWDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDP 443
           R+   + +W+    N+PE V+K    +   + +P    ++ GG  NGQV  WD+R+G  P
Sbjct: 220 RTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLIAGGAYNGQVFLWDLRQGQYP 279

Query: 444 AGL-CLPHVAHRDIVRNVLFINSKIGAEFFSSSPDGVVKWWDTRNMSEPTDSMIIDIVKS 620
                +    H + V ++ +IN+       + S DG+V  W+    S P++++ +    S
Sbjct: 280 VSFTTIISGGHLEPVTDITYINNPPSNNIVTCSTDGLVHIWEPDMFSRPSETICL---SS 336

Query: 621 ATDTQNIDNAIGISALEYEPTIPTRFMV 704
             D+ +    I  + L + P     F+V
Sbjct: 337 QVDSSS--QCIPATCLSFIPENNMEFLV 362


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = +3

Query: 288 WDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHV 467
           WDIE A A  ++      ++ L + P + ++ V G  +     WD+R     A  C    
Sbjct: 132 WDIEQAKAISVLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRA----AYCCATFP 187

Query: 468 AHRDIVRNVLFINSKIGAEFFSSSPDGVVKWWDTRNMSE 584
            +   + ++ F  S   A+F + + DG+ + +D R  +E
Sbjct: 188 GNTSDINSISFFPSN--ADFVTGAEDGIARCFDIRASAE 224



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/103 (20%), Positives = 38/103 (36%)
 Frame = +3

Query: 258 SCRSSQFSYIWDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGG 437
           S  ++    +WD+  +N       P   ++   ++P  + I  GG+ N  V +       
Sbjct: 38  SASTNDVLLVWDLHTSNKVAFFEAPSVWIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDA 97

Query: 438 DPAGLCLPHVAHRDIVRNVLFINSKIGAEFFSSSPDGVVKWWD 566
           DP  L    V H   V    +++        + S D    +WD
Sbjct: 98  DPVEL----VGHAGFVSCCKYVDD---GHLLTGSGDKTCMFWD 133


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 351 LQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHRDIVRNVLFINSKIGAEFF 530
           L++ P   H+L+ G M+ Q+  W+V        L      H   +R++ F  S+ G  F 
Sbjct: 272 LRFFPISGHLLLSGSMDNQIKIWEVY---HDRSLLRTFQGHARPIRDLSF--SQDGRSFL 326

Query: 531 SSSPDGVVKWWDT 569
           S+S D  +K WDT
Sbjct: 327 STSFDKTIKLWDT 339


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +3

Query: 348 DLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHRDIVRNVLFINSKIGAEF 527
           DLQ++P ++++      +G    WDVR     + L +   AH  +  NVL  N+++    
Sbjct: 296 DLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVN--AHPGVDVNVLSWNTRVPNLL 353

Query: 528 FSSSPDGVVKWWDTRNM 578
            + + +GV   WD R++
Sbjct: 354 ATGADNGVWSVWDLRSL 370


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 342 LLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCL-PHVAHRDIVRNVLFINSKIG 518
           L  LQY+   Q I+ G   +G++  WD+      +G C+     H   V  + F  SK G
Sbjct: 342 LSTLQYSSDGQRIITGAD-DGKIKVWDMN-----SGFCIVTFTQHTSAVSGLCF--SKRG 393

Query: 519 AEFFSSSPDGVVKWWD 566
              FSSS DG V+ WD
Sbjct: 394 NVLFSSSLDGSVRAWD 409


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +3

Query: 273 QFSYIWDIENANAPELVIKPPQPLLD-LQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAG 449
           Q + +WD+E+A AP  V    Q  +D + ++P   ++  G   +     WDVR GG    
Sbjct: 467 QTARLWDVEHA-APLRVFVGHQNDVDCVSFHPNAAYLATGSS-DHTTRMWDVRTGGTVRV 524

Query: 450 LCLPHVAHRDIVRNVLFINSKIGAEFFSSSPDGVVKWWDTRNMSE 584
                 AH   V  +    S  G    S+   G++K WD R+ ++
Sbjct: 525 FN----AHHSPVSALCM--SADGLSLASADESGIIKVWDLRSSNQ 563



 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 252 MRSCRSSQFSYIWDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDV 425
           + S   S    +WD+ ++N     +K    +  L ++  D  ILV G  +  V +WD+
Sbjct: 544 LASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLSFS-YDNKILVSGGADTDVNFWDL 600


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 25/87 (28%), Positives = 37/87 (42%)
 Frame = +3

Query: 327 KPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHRDIVRNVLFIN 506
           K   P   +Q+   D  +   G  NG V  WD R  G   G+   H  H D + ++    
Sbjct: 103 KEISPYSVVQWIENDM-VFATGDDNGCVSVWDKRTEG---GIIHTHNDHIDYISSISPFE 158

Query: 507 SKIGAEFFSSSPDGVVKWWDTRNMSEP 587
            +    F ++S DGV+   D RN  +P
Sbjct: 159 ERY---FVATSGDGVLSVIDARNFKKP 182


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 351 LQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHR-DIVRNVLFINSKIGAEF 527
           +QY+P   ++L     +  +  WD  KG       + HV+ + D++   +  N+  G   
Sbjct: 140 VQYHPTAANVLASSSADNTIKLWDCEKG-------VAHVSLKMDVMCQSMSFNAD-GTRL 191

Query: 528 FSSSPDGVVKWWDTR 572
            ++S D  V+ WD R
Sbjct: 192 VTTSRDKKVRVWDPR 206



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +3

Query: 285 IWDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPH 464
           +WD E   A  + +K       + +N  D   LV    + +V  WD R    P  +   H
Sbjct: 161 LWDCEKGVA-HVSLKMDVMCQSMSFNA-DGTRLVTTSRDKKVRVWDPRTD-KPVSVGNGH 217

Query: 465 VAHRDIVRNVLFINS--KIGAEFFSSSPDGVVKWWDTRNMSEP 587
              ++    V+++ S  +     FS   D  +  WD  N+SEP
Sbjct: 218 AGAKN--PRVVWLGSLDRFATTGFSKMSDRQIALWDPTNLSEP 258


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 22/99 (22%), Positives = 36/99 (36%)
 Frame = +3

Query: 285 IWDIENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPH 464
           +WD+E        +     +L +  +P D   +V G  +  +  W++          +  
Sbjct: 89  LWDLEKGECTHQFVGHTSDVLSVSISP-DNRQVVSGSRDKTIKIWNIIGN---CKYTITD 144

Query: 465 VAHRDIVRNVLFINSKIGAEFFSSSPDGVVKWWDTRNMS 581
             H D V  V F  +     F S+  D  VK WD    S
Sbjct: 145 GGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFS 183


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 632 RVCCRFYNVDNH*ISRFTHISRIPPFHNP 546
           R+  RF  VD+  +SR  H+  +PP+H P
Sbjct: 131 RLIQRFQEVDS--VSRVQHLDPLPPYHRP 157


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 456 LPHVAHRDIV-RNVLFINSKIGAEFFSSSPDGVVKWWDTRNMSEPTDSMIID 608
           + ++ H +++ RN+  + ++ G+ F S+  D V+++W T + S P   M +D
Sbjct: 337 MSYMGHSNLLERNLALMKNENGSIFSSAGDDYVLRFWKT-DCSLPFKEMRVD 387


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 339 PLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHRDIVRNVLFINSKIG 518
           P+   Q+ P      + G  +  V  WD+  G     L      H D VR   ++++   
Sbjct: 125 PVHVTQFCPYANTTFLSGSDDKTVKVWDLSTGAVQYDLS----GHEDYVRTASWMSA--- 177

Query: 519 AEFFSSSPDGVVKWWDTR 572
               S   DG ++ WDTR
Sbjct: 178 TRLVSGGYDGTIRLWDTR 195


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 246 ELMRSCRSSQFSYIWDI--ENANAPELVIKPPQPLLDLQYNPRDQHILVGGMMNGQVGWW 419
           EL RS  S Q   +WD+  E     +        +  LQ++P+D  +L+ G ++G V   
Sbjct: 118 ELTRSLASVQ---LWDVRSEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLL 174

Query: 420 DVRKGGD 440
           D  K  D
Sbjct: 175 DTTKEED 181


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 498 TEHYELYHDVLRAEDIGQLDPRLSEHPTNQPARSSSPLQEY 376
           T  Y LY+D+  +      +P L   PT  PAR+ SP++ Y
Sbjct: 193 TSLYSLYNDISLS---CSPEPYLPLSPTRSPARTPSPIRLY 230


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 249 LMRSCRSSQFSYIWDIENANAPELVIKPPQP-LLDLQYNPRDQHILVGGMMNGQVGWWDV 425
           L+ +  + +   +WD+ N       ++  +  +  L+++P D+ IL     + +V  WD+
Sbjct: 296 LLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355

Query: 426 RKGGD 440
            K G+
Sbjct: 356 EKIGE 360


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 288 WDIENANAPELVIKPPQPL-LDLQYNPRDQHILVGGMMNGQVGWWDVRKG 434
           WD+     P+ ++   Q   L L + P D   L+    +G+   W+V  G
Sbjct: 244 WDLRQPTVPQNILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETG 293


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 LLDLQYNPRDQHILVGGMMNGQVGWWDVRK 431
           +L + + P+++ +L  G  +G    WD+RK
Sbjct: 192 VLAVDWCPKNEFVLASGSADGTCRLWDIRK 221


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 566 IPPFHNPVGRRGEEFCSDFRVDKQNI 489
           +PP   P+G+ G   C D R  +Q I
Sbjct: 141 LPPCKTPLGKVGSAICFDIRFPEQAI 166


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
 Frame = +3

Query: 135 SCHTVNVYREPGARRPVR-SLSWQXXXXXXXXXXXXXVELMRSCRSSQFSYIWDIENANA 311
           SC  +N Y E  +   ++  +S                +L+ S    Q+ ++ DI   +A
Sbjct: 210 SCWDLNAYNESDSASVLKVHISSHEKQVSDVRFHYKHQDLLASVSYDQYLHVHDIRRPDA 269

Query: 312 PELVIKPPQ----PLLDLQYNPRDQHILVGGMMNGQVGWWDVRKGGDPAGLCLPHVAHRD 479
                +       P+  + +NP +  IL     +  +  WD+R              H D
Sbjct: 270 STKPARSVHAHSGPIHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTL---EGHED 326

Query: 480 IVRNVLFINSKIGAEFFSSSPDGVVKWWDTRNMSE 584
           IV  + F +        S+S D     WD   + E
Sbjct: 327 IVTKISF-SPHEEPILASTSADRRTLVWDLSRIGE 360


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 498 TEHYELYHDVLRAEDIGQLDPRLSEHPTNQPARS 397
           TE   ++HD  R+  +G  DP LSE   + P +S
Sbjct: 64  TEDDIIFHD--RSIQLGYFDPSLSERKQSPPGKS 95


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 465 VAHRDIVRNVLFINSKIGAEFFSSSPDGVVKWW 563
           +AH D VR++     +I   F S S DGV+K W
Sbjct: 173 LAHNDCVRSLC----QIPGGFASCSNDGVIKLW 201


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 132 SSRPEVFREHQSNKTRTYL*RCS-EVCC--VPYLFKNVF 25
           S  PE+F EH+  + R  L  C  ++C   VP LF   F
Sbjct: 200 SMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENF 238


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 449  ASWIPAFPNIPPTNLPVHHPPYKN 378
            +S +PA PN+ P N+P   PP K+
Sbjct: 1029 SSGVPA-PNLTPVNVPPTPPPRKS 1051


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 66  NNAIDMFESYYSDVPEIPP 122
           N++ID    Y +DVP IPP
Sbjct: 436 NSSIDYSSIYSNDVPAIPP 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,322
Number of Sequences: 5004
Number of extensions: 66146
Number of successful extensions: 229
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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