Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i21
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    29   0.50 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.5  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   4.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.1  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.1  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   8.1  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 10  N*QTWFSIIWCFLNKLKMFS*SNRSTDPHN 99
           N + WF+II+C  NKLK     + + D HN
Sbjct: 233 NEKRWFTIIYCADNKLKAMHMISPTLDAHN 262


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 627 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 535
           K + +Q+P  H  PH+H +  + PP D  I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 621 HSNQRPPQHRPHEHSRPVLTPP 556
           H + RPP H PH H      PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 657 HVAWHEQRQVKQHSNQRPPQHRPHEHSRP 571
           H  +HE+RQ     +  PP  R  E S P
Sbjct: 28  HTGFHEKRQGASSESLIPPAQRSSEESMP 56


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 600 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 469
           Q  PH HS  +++   D+ IA+P  +     V   L+  H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 642 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 556
           + R+ ++     PPQ    E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 387 SYQTYTEESRTWKFD*ITYTSLKIFTNEPNSASARR 494
           SY  +T  + T+  +  TY+   + TN P S S+ R
Sbjct: 400 SYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPSSGR 435


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 291 SRCMHTAEGGACGRVRQALCTTHGARPAATSDV-TSTCSNI 172
           S C H A     G++R    T HG RP +T DV TS  S++
Sbjct: 220 SLCFHFATITHYGQLR-FYDTKHGRRPVSTFDVSTSPLSHV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,256
Number of Sequences: 5004
Number of extensions: 37734
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)