Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26i19
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.2
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 27 2.9
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 27 2.9
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.8
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 27 3.8
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 26 5.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.7
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 6.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.8
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 341 QWQNMKRIAREEVALNGEFFQKYTPQSLEVCHILEVIKDGILKVENQSLNE--TRLTTNV 514
+ ++ + +++EV + E +K + + + V D L + Q++NE TR++T++
Sbjct: 262 EMESSLQTSKQEVLILKEKIKKIEDERMRQ---MSVSSDRTLDSQLQTVNENITRISTSI 318
Query: 515 EIKTESVDED 544
E+K +++E+
Sbjct: 319 ELKNTALEEE 328
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 617 NSRNSREFEASCTTSEQDSTANDTEMALEENRDVEENIQKSRHASV 754
N+ NS+E S T Q++ A T+ +L+EN +EN +KS+ +V
Sbjct: 75 NAVNSKEL--SPNTDNQNTPAGPTKHSLDENEKDKEN-KKSKKETV 117
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 353 MKRIAREEVALNGEFFQKYTPQSLEVCH 436
+++I R +A G+FF KY P V H
Sbjct: 410 LEKIYRYRIAFRGKFFDKYEPPESLVPH 437
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 317 SSIKKVKTQWQNMKRIAREEV 379
S +KK K++W N +RI +EE+
Sbjct: 283 SDVKKNKSKWANDQRIGQEEL 303
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -3
Query: 741 LDFCMFSSTSLFSSKAISVSLAVESCSEVVQEASNSREFLLFL*ITSNVDEDEPFIFVPL 562
+D + S+ K + + + E+ S+V E +++LF TS + DEP F+ L
Sbjct: 1 MDSLLLLKKSIAEKKDVKLLASSEATSKV--EKIEDAQYILFDENTSPILIDEPTKFIKL 58
Query: 561 QHD 553
++D
Sbjct: 59 END 61
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 382 SDLFSSDPLHVLPLCFNFLYRASLKFGS 299
+DL DPLH+ P+ L +++ GS
Sbjct: 229 NDLSQPDPLHIFPVANGLLMLLNIELGS 256
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 225 TMGLIIPRRKISLGTKSYGNYR*NMEPNFKE 317
T G++ P ++ISL +K Y E NF++
Sbjct: 70 TFGVVKPPKRISLASKDYIGITATSETNFRQ 100
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 278 RELSIKYGTKFQGSSIKKVKTQWQNMKRIAREEVALNGEFFQKYTPQSL 424
RE ++ ++ I K +T +++ RIARE VA++ KY +L
Sbjct: 1180 RENALPSAPEYDEYGIIKKETIGRDLGRIARESVAVSFFHISKYLSSNL 1228
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 659 SEQDSTANDTEMALEENRDVEENIQK 736
+E+D D E LEEN ++E+IQ+
Sbjct: 4122 AEKDEPMQDFEDPLEENNTLDEDIQQ 4147
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 236 NYSEEKDIAWNEILRELSIKYGTKFQGSSI--KKVKTQWQNMK 358
N +E D++W + +R + Y + QGSSI K+ W K
Sbjct: 647 NLAELLDMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTWHYRK 689
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 386 SKRPLLERSSSCSAIVF*LSLSSFLEIWFHILSIIPVRFRSKRYLSPRNN 237
S+R L E S +V L ++ +L+IIP+ KR+++ NN
Sbjct: 106 SERSLRESQSGPLLLVDPFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNN 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,391
Number of Sequences: 5004
Number of extensions: 59166
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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