Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26i19
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618 33 0.25
12_02_0705 + 22317657-22318529 33 0.32
08_01_0580 + 5160866-5161013,5161221-5161289,5161403-5161462,516... 31 0.75
12_02_0521 - 19955475-19956076,19957146-19958403 31 0.99
05_04_0081 + 17759158-17760021 30 1.7
05_02_0090 + 6507378-6507481,6507495-6507627,6507658-6507715,650... 29 4.0
12_01_0708 - 6137865-6140909 28 7.0
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 28 9.2
>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
Length = 748
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 296 YGTKFQGSSIKKVKTQWQNMKR-IAREEVALNGEFFQKYTPQSLEVCHILEVIKDG 460
Y F G K + T N+K A E + ++G F+ P+SL C LE++ G
Sbjct: 412 YNCNFSGKENKLIGTLPDNIKEGCALEAIDISGNLFEGKIPRSLIACRNLEILDIG 467
>12_02_0705 + 22317657-22318529
Length = 290
Score = 32.7 bits (71), Expect = 0.32
Identities = 27/100 (27%), Positives = 44/100 (44%)
Frame = +2
Query: 62 NKSLQKINHNPSHTFKMGKVPNNRRLRTPNWTQAEKQYLLELIKVRKDVVVTKNNNGPNY 241
NK Q I+ S K K R RT NWT+ E L+ + V T N+
Sbjct: 13 NKKRQLIS---SRQVKAAKTEVRRATRT-NWTEEENLRLISAW-LSNSVDPTDGND---- 63
Query: 242 SEEKDIAWNEILRELSIKYGTKFQGSSIKKVKTQWQNMKR 361
++ + W ++ E + T ++K++KT W N+K+
Sbjct: 64 -KKGEYYWKDVADEFNNNRPTNGHKRTVKQLKTHWGNVKK 102
>08_01_0580 +
5160866-5161013,5161221-5161289,5161403-5161462,
5162055-5162120,5162294-5162335,5162427-5162495,
5163148-5163221
Length = 175
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 617 NSRNSREFEASCTTSEQDSTANDTEMALEENRDVEENIQKSR 742
N + ++E A T ++ +TAN +EE D ++N+Q+++
Sbjct: 83 NIQQNQEEPAGITMLQESTTANGIAQIMEEETDTDDNVQQNK 124
>12_02_0521 - 19955475-19956076,19957146-19958403
Length = 619
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 386 NGEFFQKYTPQSLEVCH-ILEVIKDGILKVENQSLNETRLTTNVEIKTESVDEDLDQ 553
N E + TPQ E C+ I EV+ + + K+E + + RL I E+ D +LD+
Sbjct: 431 NEEIGRLITPQ--EACNRIAEVVHEAVKKMELVAEEKMRLYKKARIAVEACDRELDE 485
>05_04_0081 + 17759158-17760021
Length = 287
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 131 RRLRTPNWTQAEKQYLLEL-IKVRKDVVVTKNNNGPNYSEEKDIAWNEILRELSIKYGTK 307
RR NWT+ E L+ + D + + G Y W ++ E + T
Sbjct: 169 RRATRTNWTEEENLRLISAWLSNSVDPIDGNDKKGEYY-------WKDVADEFNNNRPTN 221
Query: 308 FQGSSIKKVKTQWQNMKR 361
++K++KT W N+K+
Sbjct: 222 GHKRTVKQLKTHWGNVKK 239
>05_02_0090 +
6507378-6507481,6507495-6507627,6507658-6507715,
6508756-6508814,6509127-6509169,6509325-6509422,
6509619-6509744
Length = 206
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 152 WTQAEKQYLLELIKVRKDVVVTKNNNGPNYSEEKDIAWNEILRELSIK 295
WT+ + Q L +L+K+ V +N + N +I W +I +L+ +
Sbjct: 135 WTKHKYQNLFDLVKLDLQVKAYQNYDAGNRQFRYNIVWEDISEKLTTR 182
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 326 KKVKTQWQNMKR-IAREEVALNGEFFQKYTPQSLEVCHILEVIKDG 460
K V T N+K A E + L+G F+ P+SL C LE++ G
Sbjct: 688 KLVGTIPDNIKEGCALEAIDLSGNLFEGRIPRSLVACRNLEILDIG 733
>02_05_1224 +
35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 689 QCHWQSNLAQKLYKKLQILENFYY 618
QC W+ +A+K +KL++L+ F Y
Sbjct: 891 QCAWRGKVARKELRKLKMLQMFCY 914
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,939
Number of Sequences: 37544
Number of extensions: 311513
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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