Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26i12
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 29 0.61
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 3.2
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.3
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 26 5.6
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 5.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 7.5
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 9.9
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 593 LLAVLVDTSICILVVVHFSLSESFSFPPIPLSIL*FAFSKPPPLFRYISDILYVQEFLY 417
L+ L + S IL ++ + E+ + P S + AF+K +FR + DI + F+Y
Sbjct: 101 LIPTLGNLSNIILSILGKPVQEASAIVTNPASEMGMAFTKVMNMFRMVKDIYTEESFIY 159
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 238 SGYFHLDFFYFAFHIPQLFLQ*NGSS 161
S +F+L++ FA+++PQ F + G +
Sbjct: 365 SSFFYLNYMLFAYYVPQYFQRIRGDN 390
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 565 SVFLLLFIFLSQSHFRFLQFLFQFSDLRFQSRH--LFFGIFPIFFMSRNFFM 416
S+F L +F F FL F F FS L F S+ ++F FPI FF+
Sbjct: 111 SLFRCLLLFFFFLLF-FLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL 161
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = +2
Query: 176 LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTK 271
+Q ++ M+GE+ E+++E+ +KR+ + + T+
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTR 171
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = +2
Query: 176 LQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTK 271
+Q ++ M+GE+ E+++E+ +KR+ + + T+
Sbjct: 140 VQNEMTSMKGEMAEMKVEMVEMKRETIRLNTR 171
>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 619 IQLSFQFFDFLLCL*ILQSVFLLLFIFLSQSHF--RFLQFLFQFSDLRFQ 476
+Q +F FF + + + L FI+L + H L F F F DL +Q
Sbjct: 77 LQSNFLFFSGITPIRAIFDFILTGFIYLKKEHIASNSLTFTFAFCDLMWQ 126
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 473 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 339
PPP ++ + D+ VQE + D++R + LS H ++F Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 515 PPIPLSIL*FAFSKPPPLFRYISDILYVQEF 423
PP+P+ +L + + PPPL I + + F
Sbjct: 286 PPMPIELLSYIINMPPPLLPQEPGIKWSKSF 316
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 208 SKRNPDGNSRYKT*PIRCDDEETDECFYADNETSRRI 318
+KR P G S Y+ I +DEE+D+ Y+D E + I
Sbjct: 378 AKRVPKGTSTYQATWIPDEDEESDQ--YSDVEDTEVI 412
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 315 SSRSFVIGVKTFICFFVITSN 253
SS+SFV GVK ++ +F +N
Sbjct: 41 SSKSFVRGVKRYLIYFCYCAN 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 65 KHCSQLGSLKHFILMTQIWPYSSIQSEDVEITGGSILL 178
K+ + G ++ F M Q+W Y+ + ++ G ILL
Sbjct: 68 KYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILL 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,602
Number of Sequences: 5004
Number of extensions: 49876
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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