Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i12
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0398 - 3515439-3515573,3515965-3516516                           32   0.36 
04_01_0301 + 4016588-4016627,4016715-4018837                           32   0.48 
08_01_0242 - 2007601-2007677,2007792-2007843,2008117-2008188,200...    31   0.63 
05_07_0172 - 28136987-28137124,28137458-28138009                       31   0.83 
03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795     31   1.1  
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    30   1.5  
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036     29   3.3  

>08_01_0398 - 3515439-3515573,3515965-3516516
          Length = 228

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +2

Query: 542 NEQQQEYRLKYLQAQQEVEELKRQLD--VIEFDNKQVSDQIQ 661
           NE Q E + + LQAQ ++E+LK+QL+   IE  +K+  + I+
Sbjct: 93  NELQDEIQRQILQAQTDIEDLKKQLEQSKIERQHKEECEAIR 134


>04_01_0301 + 4016588-4016627,4016715-4018837
          Length = 720

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 11/40 (27%), Positives = 28/40 (70%)
 Frame = +2

Query: 134 IQSEDVEITGGSILLQKQLGDMEGEVKEIQMEIAAIKRDR 253
           +Q+++ E+    + ++++ G  E EVK++QME++A+  ++
Sbjct: 207 VQAKNDELLSNVLAIKEKYGQSEAEVKKLQMELSALVMEK 246


>08_01_0242 -
           2007601-2007677,2007792-2007843,2008117-2008188,
           2008710-2009219
          Length = 236

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 542 NEQQQEYRLKYLQAQQEV--EELKRQLDVIEFDNKQV 646
           +E+ Q  R+K LQA+ EV   EL++QL+  E + KQV
Sbjct: 182 SEEDQLKRIKELQAENEVVGTELQKQLEAAELELKQV 218


>05_07_0172 - 28136987-28137124,28137458-28138009
          Length = 229

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +2

Query: 542 NEQQQEYRLKYLQAQQEVEELKRQLD 619
           NE Q E + + LQAQ ++EELK++L+
Sbjct: 93  NELQDEIQRQILQAQTDIEELKKKLE 118


>03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795
          Length = 94

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 620 HPIVFSILRLLAVLVDTSICILVVVHFSLSESFSFPPIPLSIL 492
           HP +  +L LL VL+  S  +LV+VH S S   S PP   S+L
Sbjct: 11  HPWLLDLLPLLIVLL-ISTHVLVLVHTSPSRESSRPPSGSSVL 52


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +2

Query: 176 LQKQLGDMEGEVKEI-QMEIAAIKRDRLDVMTKKQ--MNVFTPITKLREELI 322
           +Q+  G++EGEVKE+ + E+   KR    +M  KQ  MN F  ++K   EL+
Sbjct: 384 VQEIEGEIEGEVKELEEEEVTLFKRLTDGLMEVKQDLMNFFQGLSKEEMELL 435


>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
          Length = 762

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 4/160 (2%)
 Frame = +2

Query: 197 MEGEVKEIQMEIAAI--KRDRLDVMTKKQMNVFTPITKLREELIRAKTLAXXXXXXXXXX 370
           +E  +KE+  ++  +  K   ++ +  K  ++   + K +E+   A   A          
Sbjct: 355 LESAMKELDAKMTLLQEKESEIEALQDKVRSLEDEVAKQKEDFHTADKEADELRLEIEDL 414

Query: 371 XXXLKDLELKLS--EICHKEIPGHKEYRKYTEKEVAALKTQIXXXXXXXXXXXXXXXXXN 544
              L+  E  L+  +I   E+    E +    KE+ A K ++                 +
Sbjct: 415 RLKLEAAEEDLNNDKIASSEMETLIEQKNMLAKELEASKAEVEKIKKAMEGQASALHEMS 474

Query: 545 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQI 664
            Q +  + KYL  Q+E++  + Q++ +    +   +  ++
Sbjct: 475 AQLRVAQEKYLDKQEEIDRARAQVEELNVSLQNTKESYEV 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,211
Number of Sequences: 37544
Number of extensions: 278953
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)