Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i09
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.3  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   5.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   5.1  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   6.7  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    25   6.7  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   6.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 158  SRADCTCCSRAGTCARSSTSGAHTARTARVPLAARTARVPLAAHTARVPLAARTARVPLA 337
            S A  +    AG  A ++    +    A VPL  +   VPL++     P  A  A++P A
Sbjct: 1897 SAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVASNAKLPPA 1956

Query: 338  AH 343
            ++
Sbjct: 1957 SN 1958


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +2

Query: 20  SRSSTRGAMNCNSSEDLSL*IRRCRALSPTCKVSSESAPCSSRRAQSRADCTCCSRAGTC 199
           S S+T  + + +SS  +S  I    + S +  VSS SA  S   + + A     S   T 
Sbjct: 151 SSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTI 210

Query: 200 ARSSTSGAHTARTA 241
           +  STS    + +A
Sbjct: 211 SGFSTSTTSASSSA 224


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = -3

Query: 389 TSEAGERAQPAARE---QCAQPAAREQCAQPAAREQCAQPAAREQCAQPAVREQCAQY 225
           TS  G R    + +   Q AQP    Q +QP    Q  Q     Q  QP    Q  QY
Sbjct: 344 TSNIGSRVVSRSGQNNNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQY 401


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 492 CTTGSDAEGDVA*SAACYCGLPNGLSIRTVERDARHTWC 608
           C+T S  + D + ++   C +P+ +S + + RD   T C
Sbjct: 70  CSTSSTTDLDSSSASNSSCSIPSSISEKLLPRDNVKTHC 108


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 531 SAACYCGLPNGLSIRTVERDARHTWCSL 614
           S +C C LP+GLS  T   D   T  SL
Sbjct: 298 SVSCCCWLPDGLSFITGSPDCHITHWSL 325


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 192 PAREQHVQSARLCALLLEHGADSLLTLHVGDNA 94
           P R +  Q  R+C +L   G D L TLH    A
Sbjct: 234 PGRNETDQLNRVCEILGNPGIDELDTLHYWSQA 266


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 416 RCMRALTYF*RAYCTCCSHAADCTVLYDW 502
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 416 RCMRALTYF*RAYCTCCSHAADCTVLYDW 502
           RC +   +  ++ C CC + A  T  Y+W
Sbjct: 21  RCGKRSFHIQKSTCACCGYPAAKTRSYNW 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,539
Number of Sequences: 5004
Number of extensions: 32884
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)