Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i09
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.3  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 43  HELQQQRRPKPLNQKMQGVVA 105
           H+L+++RR K LNQ    + A
Sbjct: 4   HQLKKKRRKKNLNQNQMMIWA 24


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 206 SSTSGAHTARTARVPL 253
           S+T GA+T R  ++P+
Sbjct: 787 SATEGAYTTRGGKIPV 802


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 555 VVRSSRPQTKRHRPLRHCQSYSTVQSAA 472
           ++R SRP  K  R  +  Q  S V  A+
Sbjct: 343 ILRMSRPSDKEEREAQKSQKPSPVTGAS 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,861
Number of Sequences: 438
Number of extensions: 2452
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)