Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26i07
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 29 0.86
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 28 1.5
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 27 2.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 3.5
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 3.5
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 26 4.6
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 6.1
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 8.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.0
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.0
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 21 HG-YNLLEFAKAEISSFLQRNNVKDLIFIPYAQNDFDG 131
HG Y++LE + AEI ++R KD I + ND +G
Sbjct: 407 HGLYSILETSGAEIVGDIKRAQEKDTIILAQPDNDQEG 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 316 ILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGLGYV 191
++L+ N + NL ++ V+PPP K L L+A+ G V
Sbjct: 224 LILYTNSESIPKLNLRSNELVYPPPSKDLLQKLLALEKDGQV 265
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 173 ESPLIYNILYFSSIAIKVILSIRNEY*ILDIVPLEETGDFR 51
E ++Y +L SS+ +I ++RNE +L ++P E DFR
Sbjct: 143 ELEILY-LLRGSSVIAPLITALRNEDQVLVVLPYYEHTDFR 182
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 345 SSAGTNVATKSIHTTNDMPIIYPPS 419
SSA T +T S+ +TN I+ PPS
Sbjct: 50 SSASTETSTHSVTSTNITSIVPPPS 74
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 342 GSSAGTNVATKSIHTTNDMPIIYPPSFEAIGIVP 443
GSSAG N+A H P +PP + +VP
Sbjct: 179 GSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVP 212
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 300 LMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 437
+M KI D + +G G K I ++P+ +P FE++GI
Sbjct: 134 MMVEKIPDSTYEMVG---GLEKQIKEIKEVIELPVKHPELFESLGI 176
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 360 NVATKSIHTTN-DMPIIYPPSFEAIGIVPFNI 452
N++T+S +P+I PPSF + FN+
Sbjct: 432 NISTESPSVAMPSIPVIQPPSFPIFSSIDFNV 463
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 373 FVATFVPALLPMYIKLPSSILLFI 302
F+ T +PAL+ + + LPS LL++
Sbjct: 79 FIWTLIPALILILVALPSFKLLYL 102
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 682 DKSAPTLYSXXXXXXXXNTAPFTPFKISFEPSTCNIAPSFSPN 554
D++ P + + T+PF PF S+ S + + SPN
Sbjct: 331 DRAEPIVMNGHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPN 373
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 372 KSIHTTNDMPIIYPPSFEAIGI 437
K++ T ND+P + PS + IG+
Sbjct: 188 KTVETKNDVPEVSRPSTDTIGV 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,642
Number of Sequences: 5004
Number of extensions: 60202
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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