Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i07
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 294 VQLMKSKIDDGSLIYIGSSAG 356
           VQL+  +++  +L+YIG + G
Sbjct: 188 VQLLSCEVNGSTLVYIGDNEG 208


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 379 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 281
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 214 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 244


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 379 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 281
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 214 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 244


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 379 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 281
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 153 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 183


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 437 YANCFKTWWINYWHII 390
           YA C  + W N ++II
Sbjct: 102 YATCVLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 437 YANCFKTWWINYWHII 390
           YA C  + W N ++II
Sbjct: 155 YATCVLSCWTNIYYII 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,469
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)