Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26i01
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...    95   6e-21
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    53   4e-08
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    49   5e-07
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    35   0.009
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    33   0.038
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    31   0.12 
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    27   1.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   1.9  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   4.3  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   5.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.7  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   7.6  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   10.0 

>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
 Frame = +3

Query: 123 RLNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVR 302
           R  +++QT    Y  P N LEIDV+NP  T G+G+  +T YE+  RTN+P F++ +SSVR
Sbjct: 6   RPEIRQQTTQQMYDVPENILEIDVINP-QTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVR 64

Query: 303 RRYSDFEWLRNELERDS-KIVVPPLPGK 383
           RRYS+FE   + LER+S ++ +PPLPGK
Sbjct: 65  RRYSEFEKFHDMLERESGRVSIPPLPGK 92


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +3

Query: 234 YTDYEVRMRTNLPVFKVKDSSVRRRYSDFEWLRNELERD-SKIVVPPLPGK 383
           +  YE+   ++LPVF+ K  SVRRRY DFE L N L  D +   +PPLP K
Sbjct: 20  FVSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNILSHDYNGYAIPPLPRK 70


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 147 LDDAYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYSDFEW 326
           LD+      +FL+  V  P   +   +  +  Y +  +TNL +F   +  VRRR+SDF  
Sbjct: 7   LDEPSTNSTHFLQCLVTEPRKELQGSRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVK 66

Query: 327 LRNELER-DSKIVVPPLPGK 383
           L+  L R +   VVPPLP K
Sbjct: 67  LQEILSRMNEDCVVPPLPAK 86


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 273 VFKVKDSSVRRRYSDFEWLRNELER-DSKIVVPPLPGK 383
           + K++DS +  RYS+F  LR +L R     +VPPLP K
Sbjct: 92  IIKLQDSEIHHRYSEFASLRVQLSRLYPTCLVPPLPDK 129


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 294 SVRRRYSDFEWLRNELERD-SKIVVPPLPGK 383
           SV RRYSDFE L   + R     +VPP+PGK
Sbjct: 51  SVWRRYSDFESLVKLMRRQYPAAIVPPIPGK 81


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 186 IDVLNPVTTMGVGKKRYTDYEVRMRT---NLPVFKVKDSSVRRRYSDFEWLRNELERDSK 356
           I V +P T   + K  +T Y V  R    N P   V + +V+RRY+DF +L   L  +  
Sbjct: 204 IQVHDPHTVKEITKS-HTVYSVSTRLEEHNQP--SVSNVTVQRRYNDFAFLYQLLSNNHP 260

Query: 357 -IVVPPLPGK 383
             ++PP+P K
Sbjct: 261 GCIIPPIPEK 270


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 470 CFCGFSA--VLYK-FLLKYTIIASERQLSLQSFAGQGRYDYLAVPLQFIPEPLEV 315
           CF  F A  VL K +L KYT I        Q+   Q + D +  PL+FI +PL +
Sbjct: 164 CFLKFGATYVLTKSYLAKYTHIYRY----YQTIYHQAKLDAITEPLKFIDQPLPI 214


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 LNVKKQTLDDAYAAPANFLEIDVLNPVTTMGVGKKRYTD 242
           LNV  +TL+  Y +PA+F  I     V+ + V  KR  D
Sbjct: 603 LNVDIKTLEPEYTSPASFFTILNRRRVSDISVNFKRSAD 641


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 413 ASERQLSLQSFAGQGRYDYLAVPLQFIPEPLEVAIPPSDARIFHFE 276
           A   +L+L SF     +D++ VP  F    ++ A+    +RI HF+
Sbjct: 366 ADSDRLNL-SFGTIKEFDFVGVPAPFTKSQVDSAVEQLKSRIAHFK 410


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 448 TAEKPQKQSRFTKSTTFSHLGCSTKP 525
           T E P+ Q+   ++TT + L C  KP
Sbjct: 32  TNESPKSQNPSEEATTVNELSCEAKP 57


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 193  TSISKKFAGAAYASSNVCFLTLR 125
            +SI ++F G+AY  + +CF  L+
Sbjct: 1203 SSIMREFGGSAYCLAELCFAILK 1225


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 440 YRGPQKSHKNKVASQNRPPSPT 505
           Y G QK++     S N PPSP+
Sbjct: 411 YSGEQKTYSPTTLSTNAPPSPS 432


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 233 LHGLRSSYEDKPTRFQSERFERQTA 307
           L GL+  Y D  ++FQ E FE + A
Sbjct: 82  LRGLQKRYSDLESQFQKELFELEKA 106


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 479  SQNRPPSPTLDAQLN--QSTELVACESYAVTYFTSGSENVVSPQT 607
            +QNRPP+P + A+ N  Q+   V   +  +   T+ S +  +P T
Sbjct: 1022 TQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPST 1066


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 599 EKLHSQIRM*SRSQRMIHRQLIQW 528
           E+L S  R+ S  Q + H Q++QW
Sbjct: 309 EELQSLKRLSSEQQNLQHEQILQW 332


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 606 VCGETTFSDPDVK*VTAYDSQATNSVDWFS*ASKVGEGGRFCEAT 472
           V G T F+  DV+    Y  + +   DW   A+++GE  +FC  T
Sbjct: 77  VWGGTYFAVVDVETSQVYYDRIS---DWIFNAAELGEENKFCVVT 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,477
Number of Sequences: 5004
Number of extensions: 48799
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)