Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h24
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.17 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = +2

Query: 548 NFNTTQIDRILENGQIKPSVLQVEVNLHLGQDKLID 655
           N+    +D++LE+G++KP+  +V ++  + + K+ID
Sbjct: 244 NYVYRSVDQVLEDGKLKPN-KKVRISNEMSKVKVID 278


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 263 LNEDQIGAAVR--ASGIPREDIFIVTKLPMDNQRDVVKQLEKSLARLNMSYVDLYLIHNP 436
           L   QIG + +  AS +   ++ +  +   +N R +VKQ++   A    +   LYL +N 
Sbjct: 309 LRAKQIGFSDKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTYNG 368

Query: 437 VAFNPGFKG 463
              +  F G
Sbjct: 369 TVHDVEFPG 377


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 545 SNFNTTQIDRILENGQI 595
           + ++   IDRIL+NG+I
Sbjct: 23  TKYDDMDIDRILQNGRI 39


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 582 SNILSICVVLKLDMPIDL 529
           S++L +C+ LKL   ID+
Sbjct: 51  SDVLRVCIKLKLSQLIDV 68


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 582 SNILSICVVLKLDMPIDL 529
           S++L +C+ LKL   ID+
Sbjct: 51  SDVLRVCIKLKLSQLIDV 68


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 545 SNFNTTQIDRILENGQI 595
           + ++   IDRIL+NG+I
Sbjct: 23  TKYDDMDIDRILQNGRI 39


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  LVVVKLQRSR*TMVTLSRLWVSAPSSGSTRKDRKKLSQ 191
           L+ +KL+RSR    T++R  +S  ++      RK  +Q
Sbjct: 243 LIAIKLRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQ 280


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   QYPCTMRCIVFVITTLIVHLSEA 73
           ++PC M C V V T L   L++A
Sbjct: 340 EHPCVMDCKVGVRTYLESELAKA 362


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   QYPCTMRCIVFVITTLIVHLSEA 73
           ++PC M C V V T L   L++A
Sbjct: 255 EHPCVMDCKVGVRTYLESELAKA 277


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   QYPCTMRCIVFVITTLIVHLSEA 73
           ++PC M C V V T L   L++A
Sbjct: 574 EHPCVMDCKVGVRTYLESELAKA 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,575
Number of Sequences: 438
Number of extensions: 4303
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)