Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26h21
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 36 0.004
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.68
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 28 1.2
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 26 4.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 6.3
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 26 6.3
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.3
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 25 8.3
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 569 LTPHANSLPFEERHVTVDETVRIGRNVYRAAA-SPTNAIFECRVLSRQHATLY 724
LTP S ++ ++ +IGR+ ++ + SP+N F +VLSRQHA L+
Sbjct: 7 LTPLNESFQTKKLVISPSTIYKIGRHTNKSTSPSPSNLFFNSKVLSRQHAELW 59
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 397 RFTTVSKRLIPSNNHLLLGER*QHLNTAILVDMFKAIS 284
R +T+++ L+P N LLL Q +N +L +F+A S
Sbjct: 161 RKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFS 198
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 172 MLKCCRVV-ETKRKGIKFHK*RCLHNCYGIYNFKK 273
ML CCR + + ++ G+ + CL NC G+ K
Sbjct: 122 MLDCCRSLSDIEKDGVTLEEFSCLANCNGLRTITK 156
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 182 AVVWSKRKGKESSFINKDVCIIAMVFTTSRSIAFRDCFKHIHQ 310
+VV RKG + +N+ + MV+ TS+ IA IH+
Sbjct: 6 SVVSRGRKGLKQEKVNRSFAYLDMVYITSKVIAMSTPAAGIHK 48
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 103 LMSDLIQLLKIILSYKQGV 47
+ SD I+L IILSY QG+
Sbjct: 1113 MQSDFIRLACIILSYSQGI 1131
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 SIPSLFYLFAFISSAVFCVTNL-IGMLKCCRVVETKRK 210
SI ++ YLF I +C++N G+ + R + K+K
Sbjct: 308 SIVTIIYLFTTIVVGFYCISNFGYGLREYLRYIHQKQK 345
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 538 FRLFRHI-CPVVIHILFNCVHWWFHFFTLCYHH 443
F L H+ C + H L H++ HF CYH+
Sbjct: 45 FALLLHLPCSIYSHTL----HFFHHFTIACYHY 73
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 106 VLMSDLIQLLKIILSYKQGVFLNYGLNEELTKWAN 2
+L+ +I KI +Y LNY N++ TKW N
Sbjct: 1144 LLLFQIISKYKIKDTYATFQTLNYIQNQQPTKWPN 1178
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 8.3
Identities = 7/17 (41%), Positives = 15/17 (88%)
Frame = +2
Query: 449 IAKSKKVKPPMYTIKKN 499
+ S++++PP+YTI++N
Sbjct: 1651 LVPSRQIRPPIYTIRQN 1667
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 106 VLMSDLIQLLKIILSYKQGVFLNYGLNEELTKW 8
+L+S +QL I +QG+F G KW
Sbjct: 542 ILLSTPLQLFPAIAIIEQGIFTRSGKRNRKIKW 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,395
Number of Sequences: 5004
Number of extensions: 67569
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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