Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h21
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0317 + 20157849-20158364,20158465-20158628,20159471-201595...    29   3.8  
03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468...    29   5.0  
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200...    28   6.6  
06_01_0012 + 166514-167194                                             28   8.7  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    28   8.7  

>05_04_0317 +
           20157849-20158364,20158465-20158628,20159471-20159522,
           20159618-20159845,20159928-20160464
          Length = 498

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 172 MLKCCRVVETKR-KGIKFHK*RCLHNCYG 255
           ML CC  ++T R +GI F K  CL +C G
Sbjct: 102 MLDCCEHLDTVRAEGITFGKVACLAHCSG 130


>03_05_0239 +
           22244565-22245144,22245249-22245594,22246847-22246868,
           22246982-22247054,22247131-22247233,22247312-22247366,
           22247448-22247542,22247913-22248204,22248292-22248495,
           22248583-22248615
          Length = 600

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 397 CLNEARMLALKTLMCHGDSKE*KSETTNVHN*KEYGLQLDKCA*TVEKARCWSSKG 564
           CL +A ++      C    +E K     VH  K   + ++ CA T+    C +++G
Sbjct: 382 CLQDANIVTFYQAWCENKKEENKFHGFGVHEPKYIYIHMEACARTLYDFLCGNNEG 437


>02_01_0299 +
           2001938-2002510,2002821-2003033,2003129-2003333,
           2003485-2003560,2003665-2003800,2003905-2004009,
           2004095-2004172,2004264-2004353,2004441-2004506,
           2004836-2004892,2004996-2005073,2005165-2005212,
           2005330-2005401
          Length = 598

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +2

Query: 233 DVCIIAMVFTTSRSIAFRDCFKHIHQNG 316
           D+C+ A+  +T+R+ +F  C++H+ + G
Sbjct: 542 DICVKALHDSTARNKSFDVCYEHVSKQG 569


>06_01_0012 + 166514-167194
          Length = 226

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 172 MLKCCRVVE-TKRKGIKFHK*RCLHNCYG 255
           ML CC  ++  K +GI F K  CL +C G
Sbjct: 88  MLDCCEPLDKVKAEGITFAKLACLAHCAG 116


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 578 EALGLPLELQHLAFSTVQAHLSSCNPYSF*LCTLVVSLFYSLLSPWHI 435
           + L  PL+        ++A+  +C+P  F L T  +    SL+S WH+
Sbjct: 289 KGLPRPLDGDEEPTKVLEAYPLNCHPRYFRLTTHAIPASQSLVSRWHL 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,794
Number of Sequences: 37544
Number of extensions: 392106
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)