Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h21
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    51   1e-06
Z83731-2|CAB06023.2|  450|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    31   0.63 
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    31   0.63 
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    31   0.63 
AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical...    30   1.9  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
 Frame = +2

Query: 566 ILTPHANSLPFEERHVTVD---ETVRIGRNVYRAAASPTNAIFECRVLSRQHATLY 724
           + TP ++  PFEER + V+   + V+IGR V R  A+  NA+F+C+VLSR HA L+
Sbjct: 9   VATPKSH--PFEERRIKVNGSNDPVKIGRAVARIQATAENAVFDCKVLSRNHAILW 62


>Z83731-2|CAB06023.2|  450|Caenorhabditis elegans Hypothetical
           protein M04C9.4 protein.
          Length = 450

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 359 ITWNQPFTYCGKSASTKHECWL*RP*CAMVIAKSKKVKPPMYTIKKNMD 505
           +TW+Q   Y   S  TK EC L RP   M   + + +  P Y++  N D
Sbjct: 401 LTWHQLRFYRAHSGKTKEECDLARPDDVMAFCRERAM--PRYSLSPNRD 447


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -3

Query: 538 FRLFRHICPVVIHILFNCVHWWFHFFTLCYHH--GTLRSSKPAFVLR*GRFTTVSKRLIP 365
           F L  HI   VIHI   C   WF      Y+   G LRS++P   LR  R  ++ +  +P
Sbjct: 149 FLLINHILSCVIHIYELC-SIWFPALNFVYYPWLGALRSARPFIFLRFIR--SIVRFKLP 205

Query: 364 SNN-HLLLGER*QHLNTAILVDMFKAIS 284
            N   L++    Q +    +  MF   S
Sbjct: 206 KNRIKLIIKRSSQQIQNVTIFFMFFVFS 233


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -3

Query: 538 FRLFRHICPVVIHILFNCVHWWFHFFTLCYHH--GTLRSSKPAFVLR*GRFTTVSKRLIP 365
           F L  HI   VIHI   C   WF      Y+   G LRS++P   LR  R  ++ +  +P
Sbjct: 127 FLLINHILSCVIHIYELC-SIWFPALNFVYYPWLGALRSARPFIFLRFIR--SIVRFKLP 183

Query: 364 SNN-HLLLGER*QHLNTAILVDMFKAIS 284
            N   L++    Q +    +  MF   S
Sbjct: 184 KNRIKLIIKRSSQQIQNVTIFFMFFVFS 211


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -3

Query: 538 FRLFRHICPVVIHILFNCVHWWFHFFTLCYHH--GTLRSSKPAFVLR*GRFTTVSKRLIP 365
           F L  HI   VIHI   C   WF      Y+   G LRS++P   LR  R  ++ +  +P
Sbjct: 149 FLLINHILSCVIHIYELC-SIWFPALNFVYYPWLGALRSARPFIFLRFIR--SIVRFKLP 205

Query: 364 SNN-HLLLGER*QHLNTAILVDMFKAIS 284
            N   L++    Q +    +  MF   S
Sbjct: 206 KNRIKLIIKRSSQQIQNVTIFFMFFVFS 233


>AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical
           protein F42A6.2 protein.
          Length = 148

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 94  RTSIPSLFYLFAFISSAVFCVTNLIGMLKCCRVVETK 204
           +T +P+LF+   F   AVFC   LI   +CC  V +K
Sbjct: 23  KTPLPTLFFWHKFQHEAVFCTFCLI---RCCSSVPSK 56


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 511 VVIHILFNCVHWWFHFFTLCYHHGTLRSSKPAF 413
           V + I  + + W F +F+L +HH T R   P++
Sbjct: 497 VAVIICLSLIIWVFRWFSLSHHHWTARLFIPSY 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,695
Number of Sequences: 27780
Number of extensions: 375215
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)