Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h20
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   0.54 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.72 
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    28   1.3  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   8.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.9  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 531 QTFDRCLNILKSPSGDSWDQTIYA 602
           Q  D  L+ILK+ SGD +DQ IY+
Sbjct: 705 QFLDSLLSILKNSSGDLFDQAIYS 728


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 421 LTLTLEPAESTTGSESRPTEKIRRENQWVISHRHSHVKLLTGA 549
           L+ T +  ++T   + +   K+RR++Q+ ISH   +   LTGA
Sbjct: 448 LSATRKTGDNT--KDRKQANKVRRQDQFFISHIQKYASSLTGA 488


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 104 IQSSLKLYSRCTTSMSKAMNKFLNEN 181
           I  SLK  S+ TTS SKA+N+F  E+
Sbjct: 476 ISLSLKPKSKDTTSFSKALNRFQRED 501


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 555 YSSTGQKFDMRMSMRYNPLIFSPDLL 478
           Y  +G  F +R ++ YNPL FS DLL
Sbjct: 388 YVPSGSSFSVRANL-YNPLDFSIDLL 412


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 47  ITYTIFVVFKVFFLRCSLCIQSSLKLYS-RCTTSMSKAMNKFLNENWKKLSEELQVPMEE 223
           + Y +F     F++   + +    K Y  R   S   A++KF +   K LSE + +  + 
Sbjct: 495 LIYVLFFQPSAFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSLSEIILLKEKR 554

Query: 224 ALRDFLK 244
           A+  FL+
Sbjct: 555 AILSFLQ 561


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 318 SNLRLFRCIFLYES-FSYLFPSSLWNYSSY*RREFANTNPR 437
           ++L    CI + +  FS+L  + LW   SY +++ + T  R
Sbjct: 636 TSLEQMLCILMKDGYFSHLVITKLWQVYSYQKKDISRTQRR 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,126
Number of Sequences: 5004
Number of extensions: 50260
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)