Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26h09
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 65 9e-12
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 40 4e-04
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 38 0.002
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 5.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.1
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 7.1
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 64.9 bits (151), Expect = 9e-12
Identities = 43/116 (37%), Positives = 54/116 (46%)
Frame = +2
Query: 221 LEFQNILRIDHLWMLKSLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEKIENLDKLV 400
L F NI I ++ LK L L N I +IENL+ L L L+L NKI IENLD LV
Sbjct: 111 LSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDTLV 170
Query: 401 NLEILTLFHNRIRXXXXXXXXXXXXVFSIGDNIIEDYKEMAYXXXXXXXXSVSFKG 568
NLE L + N+I + SI N I ++ +A VS G
Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNG 226
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +2
Query: 266 KSLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEKIENLDKLVNLEILTLFHNRIR 439
++L +L L NLI +IENLD + L LDLSFN I+ I N++ L LE L NRIR
Sbjct: 82 ETLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIR 139
Score = 49.2 bits (112), Expect = 5e-07
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +2
Query: 236 ILRIDHLWMLKSLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEKIENLDKLVNLEIL 415
I+RI++L +K+L L L+ N I+ I N++ L GL L N+I +IENL+ L L L
Sbjct: 94 IVRIENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNL 153
Query: 416 TLFHNRIR 439
L N+IR
Sbjct: 154 ELGGNKIR 161
Score = 42.3 bits (95), Expect = 6e-05
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +2
Query: 197 LDEAQVVRLEFQNILRIDHLWMLKSLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEK 376
LD + L I I++L L +L KL + N I K EN ++L L+ L + N+I +
Sbjct: 147 LDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQ 206
Query: 377 IENLDKLVN-LEILTLFHNRIRXXXXXXXXXXXXVFSIGDNIIEDYKEMA 523
ENL L + L L + HN + + + +N+I+ +A
Sbjct: 207 FENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLA 256
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 263 LKSLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEKIENL-DKLVNLEILTLFHNRI 436
+ +LR L L+HN I IE+L L ++ L L N+I+K+ NL D L NL+ L + R+
Sbjct: 890 MPNLRVLDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRM 948
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 269 SLRKLTLAHNLIEKIENLDQLTGLNELDLSFNKIEKIENLDKLVNLEILTLFHNRI 436
++R L N + + + L L LD+S+N++E + L L++L L + N +
Sbjct: 647 TIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHL 702
Score = 30.3 bits (65), Expect = 0.25
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 LEFQNILRIDHLWMLKSLRKLTLAHNLIEKIENL--DQLTGLNELDLSFNKIEKIENLDK 394
L + +D M +R L LA+ ++++ + L LDLS N I IE+L
Sbjct: 852 LSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKP 911
Query: 395 LVNLEILTLFHNRIR 439
L + L L NRI+
Sbjct: 912 LQMIHRLYLVGNRIK 926
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +2
Query: 272 LRKLTLAHNLIEKI-ENLDQLTGLNELDLSFNKIEKI-ENLDKLVNLEILTLFHNRI 436
LR L + N++ + E+L +L L LD+S NKI+++ E+ L+NL++L++ NR+
Sbjct: 77 LRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRL 133
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 272 LRKLTLAHNLIEKI-ENLDQLTGLNELDLSFNKIEKI-ENLDKLVNLEILTLFHNRIR 439
+ +L L HN I+ I + + T L L++ N + + E+L +L +LEIL + N+I+
Sbjct: 54 IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIK 111
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 228 NSSRTT*ASSKCTPSSAKSLPASSVGPYSSIHRMIIALSMT 106
+SS + ASS + SSA SL + VG + I +ALS+T
Sbjct: 308 SSSSSASASSSSSSSSAASLVSQPVGISAVIAFFAVALSLT 348
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 228 NSSRTT*ASSKCTPSSAKSLPASSVGPYSSIHRMIIALSMTPGSMSGYITRLFN 67
NSS + +++CT ++ P S H I A P S +GY + N
Sbjct: 59 NSSLNSVDNNECTNLDCGGKKHKNLSPNPSFHVNINAAEFIPKSHNGYAPKSMN 112
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 248 DHLWMLKSLRKLTLAHNLIEKIE 316
+ +W + SL+ + L+ N++EKI+
Sbjct: 746 EEVWQVSSLKVVNLSSNILEKIK 768
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 191 VHLDEAQVVRLEFQNILRIDHLWMLKSLRK 280
V+L++++ V E +++ IDHLW +K
Sbjct: 754 VYLEKSKDVNAELRSLDTIDHLWTYFPFKK 783
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 DEAQVVRLEFQNILRIDHLWMLKSLRKLTLAHNL-IEKIEN 319
D A L + +L I HL +LKS+ K T N EK+ N
Sbjct: 250 DPAHSDFLNLKTVLFISHLDILKSITKQTYYENYRTEKLSN 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,311
Number of Sequences: 5004
Number of extensions: 41895
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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