Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h09
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 360 LTKLKRLKTWINS*IWKSLRCFITESGNWKTW 455
           +T+L+  + WI+     ++ CF+T    W +W
Sbjct: 361 MTQLRE-EGWIHHLARHAVACFLTRGDLWISW 391


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 572 PCCDDPMAYQFIKSALTRVT 631
           PCCD+P    F    L R T
Sbjct: 216 PCCDEPYPDIFFNITLRRKT 235


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
 Frame = +2

Query: 170 RLFAEEGVHLDEAQVVRLE---FQNILRIDHLWMLKSLRKLTLAHNLIEKIENLDQLTGL 340
           RL +   +H+   +V+R+    FQ +L +  L  +++   +  A   +E     D   GL
Sbjct: 90  RLTSLHELHVHGCKVLRIPEGAFQPLLELKKL-TVQTFNSVWGASRFLELAP--DSFLGL 146

Query: 341 NEL---DLSFNKIEK--IENLDKLVNLEILTLFHNRIR 439
            EL   ++  + ++   + +L  L NL+ L L  NR+R
Sbjct: 147 RELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLR 184


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 99  SLVSLIMR*SYDVYLSTGLLKKQEDFL 179
           +LVS+IM  ++ +    GLL+ + ++L
Sbjct: 409 ALVSIIMYIAFIILQYAGLLRNRSEYL 435


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 241 KNRSSMDVEIFKEINFSS*FNRKNRKSGSTY 333
           +  S+++ E   E N SS   +  RKSG+T+
Sbjct: 218 RKSSTIENESETESNASSTKTKMRRKSGATF 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,495
Number of Sequences: 438
Number of extensions: 2561
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)