Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26h07
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 31 0.16
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.2
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 2.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.7
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.5
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 27 3.5
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 6.1
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 6.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.1
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 8.1
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 8.1
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 8.1
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +1
Query: 418 DVALSRLSADENGCVKCEKI------IDEIFGKDAKWDDKYMLGNATRLPNEDLTILPKD 579
D++L +L E C I DE F K A D Y++GN + EDL+ LP
Sbjct: 718 DLSLEKLPTLEINTFNCPAISYFETSFDECFSKFAS-SDNYIIGNLLKTNQEDLSNLPTF 776
Query: 580 NNIGIRLDN 606
+ +R+ N
Sbjct: 777 RSQALRVLN 785
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 484 EIFGKDAKWDDKYMLGNATRLPNEDLTILP-KDNN--IGIRLDNTDAKNVGEKLKEAA 648
E+ K+ K D K + ++D P KD+N + + D+K+V EK++EAA
Sbjct: 503 EVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAA 560
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 416 LDLSLALLKTCASLESSCTIGLLGPNTKSIIFLHLAHLASSSDPLFVLFCSLL 258
LD SL +LK +L S T+G + PN ++ L + +S ++ L CS +
Sbjct: 433 LDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELVCSFV 485
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 2.7
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 394 NKASDKSKDVALSRLSADENGCVKCEKIIDEIFGKDAKWDDKYMLGNATRLPNEDLTILP 573
NK D+ K++ S L +N + + + K+ + KY+ GNA L N +L +
Sbjct: 604 NKLQDREKELT-SNLEK-KNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEIL 661
Query: 574 KDNNIGIRLDNTDAK---NVGEKLKEAAI 651
D ++ TD K +V E+ +E AI
Sbjct: 662 NDKISVLQRQLTDVKDELDVSEEEREEAI 690
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 533 FPSMYLSSHFASLPKISSIIFSHLTQPFSSALNLDKATSLDLSLALLKTCASLESS 366
FPS+Y + +S SSI SH +QP +S+ + ++ S + T + + +S
Sbjct: 45 FPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSAS 100
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 229 KIAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHV 390
++ +SI ++ ST K I+ FG K IVHE SKD ++
Sbjct: 315 ELYQSILRKRANQVSSTSLTKSSSPKPLPSSAIVKFDFGNGKSIVHEFSKDDNI 368
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 367 EDSKDAHVFNKASDKSKDVALSRLSADEN 453
E SK V +++SD+ KD ++R++AD++
Sbjct: 53 ETSKKLLVSHESSDRLKDQEVARINADDD 81
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 197 VLHSPTAIHTVKLPKVLRFCKANYKRAQRADPKTRLNAL 313
+L +P V+ +++ +AN+ R + D K R+NA+
Sbjct: 4 ILSTPKTPIEVRRKRIVPLFRANHTRFRPVDEKNRINAV 42
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 262 KLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPI 360
KL S++ S+D+ K CK +D+ G + PI
Sbjct: 57 KLDPSSEDFSQDDQKQIFCKLCVDICNGCSTPI 89
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 557 SSLGKRVAFPSMYLSSHFASLPKISSIIFSHLTQPFSSALNLDKAT 420
+S+G + S YL S A + K+ S+ S L S+ LN+ T
Sbjct: 870 TSIGLLLGLASSYLGSMDAKVTKLLSVHISALLPVGSNELNISPLT 915
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -1
Query: 141 HFVSKLEVMGVTSVENYIFIFFLYRYMIFFIFENY 37
HF+ K+ + V + F F + ++F+IF ++
Sbjct: 102 HFLEKISMFDTFLVRVFQFCAFFFGGIVFYIFNHF 136
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 535 HSPA--CTYHPTLRLYQRSHQLSSRI*HNHFHRHLISIKQHL 416
H P C Y L Y S++ ++I H FH +L I ++
Sbjct: 144 HGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNV 185
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 547 PNEDLTILPKDNNIGIRLDNTDAKNVGEKLKEAAICLAVNDKSRQKSSL 693
P+++ + + N+IG + ++ EKL +A + N +S SSL
Sbjct: 226 PSDEAESITRKNSIG--MSTRSDESTAEKLAKAEVATPTNSRSISHSSL 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,492
Number of Sequences: 5004
Number of extensions: 60345
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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