Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h07
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0474 - 3666236-3668050                                           29   2.8  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    29   3.7  
01_01_0595 - 4430738-4430785,4430904-4432679                           29   3.7  
06_01_0886 - 6801333-6802886                                           28   6.4  
07_03_0347 + 17036086-17036206,17036548-17037173                       28   8.5  
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756...    28   8.5  
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500...    28   8.5  

>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 49  NKKNHIPI-QKENENVVFN*SYTHHF*FRYKMWTAAVRTVNKANPAAFLFRTSLADC 216
           +K+ + P+    + +++    Y H +  + K W   + T NK  P+ F ++   + C
Sbjct: 393 HKRPYYPVVSTRDSHIICFLVYDHDYCVKEKFWKIMLDTTNKTLPSVFAYKNQSSPC 449


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 403 SDKSKDVALSRLSADENGCVKCEKIIDEIFGKDAKWDD-KYMLGNATRLPNED 558
           SDK+  + L++LS D+N       +I+ +F K  + DD   M   A+RL N+D
Sbjct: 389 SDKTGTLTLNKLSVDKN-------LIEVVFEKGIEKDDVVLMAARASRLENQD 434


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
 Frame = +1

Query: 274 STKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKD-------AHVFNKASDKSKDVALS 432
           S  +G ED+   A+  KI +    P KPI HE+ K+       ++   ++ D+  + + S
Sbjct: 287 SVANGVEDDYARAEASKIQEKPKIPEKPINHEEIKEQVSKKQRSNTCRESKDQECNQSCS 346

Query: 433 RLSADENGCVKCEKIIDEI-FGKDAKWDDKYMLGNATRLPNED 558
            +SA ++     EK    I   + A+ +D +      R P ++
Sbjct: 347 AISAKQSEVEALEKACKAIDLNEAAREEDSWDGERVAREPTQE 389


>06_01_0886 - 6801333-6802886
          Length = 517

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 169 KANPAAFLFRTSLADCNTHGKIAKSIAILQSKLQKSTKSGSED 297
           +  P+A ++RT L  C THG +     +++ KL    +  S D
Sbjct: 428 RCEPSAVVWRTLLGACRTHGNMTLG-KLVREKLLNMNEDASAD 469


>07_03_0347 + 17036086-17036206,17036548-17037173
          Length = 248

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 205 VKYEIEMPPGSLYLPSSPRRSTFC 134
           V   ++ PPGS+   ++P RS+FC
Sbjct: 32  VACSVQTPPGSIKKATTPMRSSFC 55


>03_05_0169 +
           21474655-21474771,21474879-21474971,21475553-21475642,
           21475728-21475811,21476088-21476252,21476995-21477182,
           21477363-21477435,21477766-21477819,21478019-21478276,
           21478891-21479097,21479293-21479396,21479809-21479953,
           21480108-21480242,21480610-21480783
          Length = 628

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 325 IIDLVFGPNKPIVHEDSKDAHVFNKASDKSKDVALSR 435
           +I ++FG N P+  +D      FNK  D+S+  A+S+
Sbjct: 153 LIPVLFGENPPMSSKDVAKFSPFNKNLDESQKDAISK 189


>02_04_0540 +
           23748610-23748930,23749054-23749157,23749889-23750063,
           23750149-23750212,23750867-23750946,23751128-23751287,
           23751415-23751476,23751607-23751666,23751824-23751882,
           23752194-23752275,23752691-23752740,23752847-23752980,
           23753508-23753590,23754070-23754142,23754461-23754477
          Length = 507

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = +1

Query: 232 IAKSIAILQSKLQKSTKSGSEDEAKCAKCKKIIDLVFGPNKPIVHEDSKDAHVFNK-ASD 408
           I + I+  + K+Q++ K   ED+AK A    I ++            SK+   F+K   +
Sbjct: 164 IERLISECERKIQRALKRLEEDDAKAAIAISITEVT----------QSKEVIEFSKQIKE 213

Query: 409 KSKDVALSRLSADENGCVKCEKIIDEIFGKDAKWDDKYML 528
           K K++    L  +  G ++  + +D++  + A+   K++L
Sbjct: 214 KMKEIDAFDLEGNTEGKIRATEEVDKLKEQRAEEQAKHLL 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,589
Number of Sequences: 37544
Number of extensions: 348566
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)