Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26h01
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999...    30   1.5  
11_04_0002 + 11993690-11993719,11993751-11993898,11994284-11994555     28   4.6  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    28   4.6  
01_05_0490 + 22672241-22674679                                         28   4.6  
12_01_1043 + 10731454-10732131                                         28   6.1  
06_01_1155 + 9777611-9777808,9777899-9780132,9780218-9780469,978...    28   6.1  

>06_01_1169 +
           9996068-9996265,9996356-9998589,9998675-9998926,
           9999007-9999117,9999207-9999288,9999563-9999754
          Length = 1022

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 101 SRSNQHAPARPPPMVVT-PTPQRSLFRD 181
           S + QHAP  PPP+  + PTPQ +L  +
Sbjct: 619 SPTKQHAPPAPPPVQTSPPTPQSALVEE 646


>11_04_0002 + 11993690-11993719,11993751-11993898,11994284-11994555
          Length = 149

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 165 RCGVGVTTIGGG--RAGACWL 109
           RCG+GV  +GGG    GA WL
Sbjct: 119 RCGLGVMKVGGGGLGGGAAWL 139


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 116 HAPARPPPMVVTPTPQRS 169
           HAPA PPP    PTP ++
Sbjct: 169 HAPAPPPPQAPAPTPPQA 186


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 65  NVVSRGGSKTRYSRSNQHAPARPPPMVVTPTPQRS 169
           N+  +GGSK+R  R +  AP +PPP    PT +RS
Sbjct: 621 NLFKKGGSKSR--RIHSVAPPQPPP-PPPPTTRRS 652


>12_01_1043 + 10731454-10732131
          Length = 225

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 41  ILSFIVN*NVVSRGGSKTRYSRSNQHAPARPPPMVVTPTP 160
           +L  + +  + SR G  +++     HA   PPP  V P P
Sbjct: 13  VLVVLPSSTLCSRAGPSSKHGHGGGHAKRVPPPASVPPPP 52


>06_01_1155 +
           9777611-9777808,9777899-9780132,9780218-9780469,
           9780550-9780660,9780750-9780831,9781106-9781297
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 101 SRSNQHAPARPPPMVVT-PTPQRSLFRD 181
           S + QHAP  PP +  + PTPQ SL  +
Sbjct: 619 SPTKQHAPPAPPSVQTSPPTPQSSLVEE 646


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,293
Number of Sequences: 37544
Number of extensions: 267476
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)