Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g23
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   2.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.1  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   4.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.5  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    25   5.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   9.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   9.5  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 180 TGTKFLLHCNHSIILRFSSNIPFLLFSKQN*YYGFSKWQTRNFTQATRFTANN 338
           T  KFL   N+   +   SN P    S Q  ++G  K   +N  +AT   +N+
Sbjct: 130 TTFKFLTRKNNPSSMSLVSNYPLDAISSQQKFHGNDKTLEKNSAKATINKSNS 182


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 96  KKNRKLAFCPSL*VWEIEYSSVR 164
           KK   L F PS  VW+ EY + R
Sbjct: 363 KKELNLNFLPSFDVWDREYYTAR 385


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 210 DCSEAKTLYRFLRKLRGRRS 151
           DC+ AKTL++ +RKL   ++
Sbjct: 209 DCTTAKTLFKQVRKLENTKN 228


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 206 QSFNYPAIFIEHSIPSLFQTKLVLWIQ*VANKKLHTSHKIHCK*LKVVSQTVEIL 370
           Q  ++P       IPS +Q      +Q + ++KLH+   +H K L  +SQ   IL
Sbjct: 297 QLSHFPDHLDPSRIPSPYQPSS---LQPLESRKLHSKVDVHSKKLNALSQLNPIL 348


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 371 TKSPLSG*QLSVICSESCGLC 309
           TK+P  G  L V CS   GLC
Sbjct: 88  TKAPEEGKTLMVACSSDKGLC 108


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 133 YREGQNANFRFFFILHKKYI 74
           Y +  NA   +FF +HK YI
Sbjct: 522 YAQKYNAPLLYFFSMHKDYI 541


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 208  IIQLSCDFHRTFHSFSFPNK 267
            +I  +C +H+TF S  FP K
Sbjct: 962  LIYKNCSWHKTFISDVFPTK 981


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,349
Number of Sequences: 5004
Number of extensions: 35447
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)