Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g23
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    28   3.0  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    28   3.0  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    26   9.2  
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238     26   9.2  

>03_06_0353 -
           33317015-33318235,33318567-33318824,33319587-33319904,
           33319949-33320011,33320103-33320496,33320684-33320796,
           33320932-33321639,33321667-33323199,33323395-33323607,
           33323718-33324700,33324890-33325423,33325694-33325820,
           33326083-33326162,33327347-33327377,33327949-33328053,
           33328119-33328124,33328349-33328985,33329144-33329478,
           33330394-33331113
          Length = 2792

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 DFHRTFHSFSFPNKISTMDSVSGKQETSHKPQ-DSLQITES 345
           D  +   S  +P+K   M+ +  K ETS KP  DS ++ ES
Sbjct: 457 DVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKES 497


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 SIILRFSSNIPFLLFSKQN*YYGFSKWQTRNF 308
           ++ILRFS ++PF LF +   +  F+K  T  +
Sbjct: 296 ALILRFSRDLPFCLFLQTVAFVAFNKVMTAQY 327


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 167  NFRKNRYKVFASLQSFNY 220
            NF++ R KVF  LQ FN+
Sbjct: 3710 NFKRTRQKVFKLLQCFNF 3727


>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
          Length = 490

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 319 VACVKFLVCHLLN 281
           +ACV FL+C LLN
Sbjct: 167 IACVSFLICFLLN 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,379
Number of Sequences: 37544
Number of extensions: 193631
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)