Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g21
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   3.8  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   6.6  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 99  QKKE*CKYILYKTLTYHLIFTGNCLNLSIRNATYLIAYR 215
           +KKE CK +L   L    +F  NC +L    A Y++ ++
Sbjct: 394 RKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVVVFK 432


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 307 FYSCTKYRTLVPKH 266
           FY C  YR +VPKH
Sbjct: 126 FYQCIDYRLVVPKH 139


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 214 VCCNSSLKIKSIIRID 261
           +CCN ++K+KS +RID
Sbjct: 335 LCCNWAIKLKSHMRID 350


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 136 VLYNMYLHYSFFWRSNCVIPRVCVSSKQISKIHNLSDATVC*FLC 2
           +LY+  L Y + WR    +  VC   K I      SD      +C
Sbjct: 130 LLYHPQLEYDYVWRIEPGLKLVCEEKKDIFSTFKDSDIVFTNHVC 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,513
Number of Sequences: 5004
Number of extensions: 56431
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)