Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g20
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.93 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.6  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    26   2.2  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   6.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.6  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.6  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 82  DYGVFRFDSY--SFSNDTFHNVLNGCTKTWHKKFVSVS 189
           DYG+ +  S   SF+N T  +VL  C   W   + SVS
Sbjct: 351 DYGMNKLVSLIESFNNITMESVLTECLNDWSTTWSSVS 388


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 40   GQVTFLSPHDRSEGDYGVFRFDSYSFSNDTFHNVLN 147
            G V   S   +S+ +Y V  + +   S+DT+ NVLN
Sbjct: 959  GPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVLN 994


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 216 YYNLRKLQERNTNKFFVPCFGTAI*NIMK 130
           Y+N+R L    T K  +PC   AI  I++
Sbjct: 134 YHNIRHLDPEKTKKSILPCTPLAIVKILE 162


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 37  VGQVT-FLSPHDRSEGDYGVFRFDSYSFSNDTFH 135
           VG+ T F  P D  +GD G    D+Y  S+ + H
Sbjct: 24  VGRKTGFTVPRDVKKGDDGFEDMDAYFLSDGSIH 57


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 292  KKMLYILYSTNYLQAQQNS*CQITL-VLQFEKITRTKH*QI-FCAMFWYSHLKHYEMCHW 119
            ++ L  LY    L+A+ +  C I   +++   IT   H    FC   W  H     MC  
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKT 1131

Query: 118  KMN 110
            K+N
Sbjct: 1132 KLN 1134


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 35  WSAK*HSYRRMTAVKEIMVYSDLTHIHFPMTHFI 136
           WS +  +Y+ +T+   +++YSD  ++      FI
Sbjct: 568 WSRRFDTYKTLTSKVALLLYSDRKYVVLSALRFI 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,240
Number of Sequences: 5004
Number of extensions: 36902
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)