Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g19
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...   142   4e-35
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    33   0.037
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.4  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   2.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   3.2  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.7  

>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score =  142 bits (344), Expect = 4e-35
 Identities = 66/128 (51%), Positives = 94/128 (73%)
 Frame = +2

Query: 278 MGKQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSAL 457
           MGK + TRK     FA++K++IN  D R++  ++ + K+K   +  ++  RE+PQ +S L
Sbjct: 1   MGKAKTTRK-----FAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELV--REIPQMASNL 53

Query: 458 FFQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEKLGR 637
           FFQ+N  LGPPYHV+IDTNFINF ++ K+D+ + +M CLYAK IP I+DCV+ ELEKLG 
Sbjct: 54  FFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGI 113

Query: 638 KYRVALRI 661
           +YR+ALRI
Sbjct: 114 RYRIALRI 121


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 455 LFFQYNMQLG--PPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEK 628
           L   Y +  G   PY VL+D +F+    + K+DI   +   +     P IT C + +L  
Sbjct: 12  LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71

Query: 629 LGRKYRVALRI 661
              + +  +RI
Sbjct: 72  KSDELKQEIRI 82


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 281 GKQRKTRKIVEKRFAKMKKMINPSDSR 361
           G    +RK++ KR AK   M+  SD+R
Sbjct: 135 GPLSNSRKLIPKRSAKFSSMVGSSDTR 161


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 404 VDPHVIKIREVPQTSSALFFQYNMQLGPPYH 496
           VD   I+IR V  + +A +F   + LGPPYH
Sbjct: 16  VDEPAIQIRLV--SGNAEYFGTELALGPPYH 44


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 637 SSKFFQFSKDTISNIWYAFSIKTIHH 560
           S  FF FS+D      Y F IKTIHH
Sbjct: 364 SGSFFYFSRD------YRFIIKTIHH 383


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 NRYSNDKPYEQYDVHPILIN 159
           N Y   KPY ++ VHP L+N
Sbjct: 454 NGYVFQKPYVEFFVHPSLLN 473


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 192 RTVRCAPNSYKFYLLFQNASILRISDFSIIITICAHCNLH 73
           R  RC    Y FYL     SI R     I   +C  C++H
Sbjct: 316 RCFRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNECSMH 355


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 461 FQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCV 610
           FQ + ++ PPY   ++  +    I+  L    +  +C  + C+P +T C+
Sbjct: 33  FQNSTKISPPYSENVE-GYPKVKIEKSLPYKYD--NCKLSICVPIVTTCI 79


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 104  LLQSAHIAIYTLISIFNTQINQKYIKI 24
            L QSA +    LI++ NT+IN K +K+
Sbjct: 1975 LSQSAILITEKLINLCNTRINSKSVKM 2001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,787
Number of Sequences: 5004
Number of extensions: 59853
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)