Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g16
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   202   3e-52
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    33   0.21 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    33   0.21 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    33   0.21 
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  202 bits (492), Expect = 3e-52
 Identities = 95/200 (47%), Positives = 138/200 (69%), Gaps = 5/200 (2%)
 Frame = +2

Query: 137 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 316
           +++SEED++L+E+LN+LV +L   +  LY P+L+ +  LIR STTSMTSVPKPLKF+R H
Sbjct: 31  EEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90

Query: 317 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 496
           Y  +K+++  I     KK CAD+ISVLAM         E+ + + Y +LG+   +GDWGH
Sbjct: 91  YNKMKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGH 144

Query: 497 EYVRQLEGEIAEEWNIENMD-----SLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLL 661
           EYVR L  E++EEW  E         LL L +D+++  MKH+AE++ACDLL+EI+R+DLL
Sbjct: 145 EYVRHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNAEVEACDLLIEIERIDLL 204

Query: 662 TQHMDQSNYPRVCLYLIGCA 721
             ++ + ++ RVCLYL+ CA
Sbjct: 205 ISYVQEVDHQRVCLYLLSCA 224


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 137 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 310
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 672 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 731

Query: 311 EHYPALKQVYEKITDE 358
           E Y  +    EKI  E
Sbjct: 732 EKYDRVHTDNEKILGE 747


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 137 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 310
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804

Query: 311 EHYPALKQVYEKITDE 358
           E Y  +    EKI  E
Sbjct: 805 EKYDRVHTDNEKILGE 820


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 137 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 310
           ++L  E+ RL+ E+N L DK   L NE +     ++     IR S     ++ K L  LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804

Query: 311 EHYPALKQVYEKITDE 358
           E Y  +    EKI  E
Sbjct: 805 EKYDRVHTDNEKILGE 820


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 314 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 490
           H PA K  YE+   EK   +  D   ++   V    +E+A+ RE L+  +    S   D 
Sbjct: 62  HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121

Query: 491 GHEYVRQLEGEIAEEWNIENMDSL 562
             + V ++E +IA+  N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 140 DLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSM----TSVPKPLKFL 307
           D SEED  L   L  LVDKL    + L   +L+ + N +  S  S+      +   L+F 
Sbjct: 493 DHSEEDNILLSSLKCLVDKL--ETISLQNISLEDVVNRLSESYKSLLARIVELESELEFE 550

Query: 308 REHYPALKQVYEKITDEKTKKF 373
           +E   AL++   K +   +K +
Sbjct: 551 KEKNRALQETINKSSSADSKLY 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,241
Number of Sequences: 27780
Number of extensions: 282598
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)