Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g11
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 474 ICKLEDICCKTLSWKLHYQR 533
           +C   D+C KTLS KL  +R
Sbjct: 370 VCYTCDVCGKTLSTKLTLKR 389



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 161 VELQGDGHPLQPPRIA 114
           V+  G GH LQPP +A
Sbjct: 324 VKFPGMGHGLQPPDLA 339


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 273 QPPRPIAAFDKATIAIGHHGR 335
           QPPR  A F    I + H G+
Sbjct: 332 QPPRGAADFTAQVIVLNHPGQ 352


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 273 QPPRPIAAFDKATIAIGHHGR 335
           QPPR  A F    I + H G+
Sbjct: 43  QPPRGAADFTAQVIVLNHPGQ 63


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 451 SVYCILLIFAN*KTSAAKPYLGNFITKENIIDMF 552
           +V+ +LL      TS   P LG F+    I+D F
Sbjct: 283 TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTF 316


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 576 NEINLKQLKHINYILFGNEVSKIGFCSRC 490
           N++NL+   H+N+ + G  V+ +   SRC
Sbjct: 389 NDLNLE---HVNFQILGANVNDLIRNSRC 414


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 454 QIHKIILLLPLTQNIFLGHYNIN 386
           Q +K I L  LT+N+ + +YNI+
Sbjct: 88  QEYKNIKLYGLTKNLEIKNYNID 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,752
Number of Sequences: 438
Number of extensions: 3959
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)