Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g01
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    29   0.40 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    29   0.40 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   1.6  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   1.6  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    26   2.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   3.7  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.9  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   8.6  

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 79  MKIPKVYQSCNLSNVPFRNNQIAYKAYSVELEKSLRNVDWMLNLQQYVE 225
           +K+ K +Q C+ S   F   Q+ Y    +EL+      +W++  Q Y +
Sbjct: 130 LKVAKEFQICDSSQEWFFQFQLGYHRKQMELQMLSFVAEWLVLTQHYTD 178


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 148  YKAYSVELEKSLRNVDWMLNLQQYVELESKARAD 249
            YK++ V   KSL  + ++LNL +Y++ ES A  D
Sbjct: 1153 YKSFYV-CNKSLSYIGFVLNLHKYIQHESAAMCD 1185


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 226 LESKARADFANPNKKWREGTAKTSFTYLLLDPRLTHNLPERASKQNQ 366
           LE+  + D      +WRE      + Y+L++ RL      R SK  +
Sbjct: 20  LEAAEKLDVIEGKYQWREQKESDEYDYVLVESRLHELRRHRLSKNTR 66


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 LLDPRLTHNLPERASKQNQHVSWVTFVNS 396
           LLD     N+P+  SK+N H+S +  V+S
Sbjct: 292 LLDQYSISNIPKDESKRNSHLSILAIVDS 320


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 287 AVPSRHFLLGLAKSARALLSNSTYCWRFSIQSTLRRD 177
           A   +HF+LG  KSARA    + Y W F+  S++  D
Sbjct: 136 ASAEKHFVLGNEKSARA-YGETMYYW-FTSDSSISPD 170


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 284 VPSRHFLLGLAKSARALLSNS 222
           +PS  FL+ + KS  ALL+NS
Sbjct: 480 LPSTEFLVAINKSQEALLNNS 500


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 236 LLSNSTYCWRFSIQSTLRRDFSNSTLYAL*AIWLFLNGTFERL 108
           ++ + TY +  ++   L RDF NS  Y    I LF++     L
Sbjct: 255 IVEDGTYKYLLNLMRDLGRDFKNSEEYPHLFIHLFMSENIPNL 297


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -2

Query: 360 LFAGSLREIVRESRIQEKIREGSLRRAFPPFFIGISEIGARFAFQLN 220
           L   S+ E V+   +Q  + +  +++ F   + GIS I ++F+F+++
Sbjct: 20  LLLESISEPVQNYAVQAVVCKNDIKKTF---YFGISGIPSQFSFEID 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,551
Number of Sequences: 5004
Number of extensions: 38103
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)