Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26g01
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 1.2
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 2.7
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406... 28 3.6
08_02_0363 + 16238710-16240224,16240537-16240545 27 4.8
02_05_0464 - 29256887-29257765,29258455-29258538 27 4.8
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 27 6.3
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 6.3
05_06_0016 + 24958681-24958872,24959390-24959472,24959534-249596... 27 8.3
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 151 KAYSVELEKSLRNVDWMLNLQQYVELESKARADFANPNKKWREGTAKTSFTYLLLDPRLT 330
K Y V + SL ++D + L + E + + N + E TSF LLLD L
Sbjct: 580 KIYMVSIVLSLLHMDDSIKLSEVAPSECSVSHECFDSNVESEEKNMVTSFVGLLLD-ILR 638
Query: 331 HNL 339
HNL
Sbjct: 639 HNL 641
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 353 LALSGRLCVSRGSKRRYVKEVFAVPSRHFLLGLAKSARALLSNSTYCWRFS 201
L L + ++ S +++++ VP RHF L L AL S+ + + F+
Sbjct: 1352 LKLMNKEYAAKESLKKFLRFFVGVPKRHFCLSLESKPAALSSHPLWQYPFT 1402
>01_03_0304 -
14838977-14838988,14839291-14840302,14840414-14840609,
14840795-14841149
Length = 524
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 272 HFLLGLAKSARALLSNSTYCWRFSIQSTLRRDF 174
+ +LG++ R+L + T W+ IQ +RRD+
Sbjct: 165 NIVLGISHFNRSLFNKITVKWKRGIQKKIRRDY 197
>08_02_0363 + 16238710-16240224,16240537-16240545
Length = 507
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 160 SVELEKSLRNVDWMLNLQQYVELESKARADFANPNKKWREGTAKTSFTYLLLD 318
S +L S +WM L +YV+ + DF + NK + T + + LL D
Sbjct: 25 SGDLSSSEIKSEWMNELSRYVDNSPECYYDFNSLNKNEKHMTTEDFLSMLLED 77
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 270 MAGRHGEDFLHVSSLGSATHAQSPGESQQT--KPTCLLGHF 386
+ GRH E LH+S G H P + T P C LG F
Sbjct: 147 LQGRHMETGLHLSFSGMQHHLAPPPPAAATAADPLCSLGLF 187
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -2
Query: 252 EIGARFAFQLNILLEIQHPINXXXXXXXXXXXXFIGNLVIPKWNIRKITR 103
E G + +LN L+++HP+ + + +P +NI +I R
Sbjct: 345 ETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVVVGMGVPLYNIPEIRR 394
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -2
Query: 252 EIGARFAFQLNILLEIQHPINXXXXXXXXXXXXFIGNLVIPKWNIRKITR 103
E G + +LN L+++HP+ + IP W I +I R
Sbjct: 529 ETGEYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRR 578
>05_06_0016 +
24958681-24958872,24959390-24959472,24959534-24959621,
24960250-24960468,24960958-24961692,24961780-24962124,
24962196-24962411,24962551-24962847
Length = 724
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 205 NLQQYVELESKARADFANPNKKWREGTAKTSFTYLLLDP 321
N+ Q+++ ++++ P K+ G KTSF ++ L+P
Sbjct: 58 NVLQFIKGIMQSQSGMGGPEKENISGWEKTSFLFMSLEP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,372
Number of Sequences: 37544
Number of extensions: 226224
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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