Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26g01
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.47 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.47 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   5.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 290 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 183
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 290 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 183
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 RRRLPSRIFSWIRDSRTISRREPANKTNM 370
           R  LP  I SW++D R +   E  + TNM
Sbjct: 636 RGDLPLSI-SWLKDGRAMGPSERVHVTNM 663


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +1

Query: 73  YLMKIPKVYQSCNLSNVPFRNNQIAYKAYSVELEKSLRNVDWMLNLQQYVELESKARADF 252
           YL   P++Y S      P +++Q  +   SVE +  +      +  Q+Y ++E     + 
Sbjct: 140 YLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEP 199

Query: 253 ANPNKKW 273
           ++  K +
Sbjct: 200 SSSTKSY 206


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 324  THAQSPGESQQTKPT 368
            T +QSPG  QQT  T
Sbjct: 1283 TSSQSPGNQQQTIQT 1297


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 85  IPKVYQSCNLSNVPFRNNQIAYKAYSV 165
           I  +  SCN SN  + NN      Y++
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNI 330


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 420 FTFPDVKYGVYKSDPRDMLVLFA 352
           F +PD K  + K + +DM  LF+
Sbjct: 655 FFYPDRKQVILKCNIQDMSFLFS 677


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 420 FTFPDVKYGVYKSDPRDMLVLFA 352
           F +PD K  + K + +DM  LF+
Sbjct: 745 FFYPDRKQVILKCNIQDMSFLFS 767


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 AGRHGEDFLHVSSLGSATHAQSPGESQQTKP 365
           + ++GE      + G AT A SPG  ++  P
Sbjct: 896 SSKNGEPTSAAFAQGFATAASSPGLLERASP 926


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 275 GKARRRLPSRIFSWIR 322
           G A   LPS ++ W+R
Sbjct: 250 GAASANLPSPLYPWMR 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,884
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)