Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f24
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   0.49 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   2.0  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   3.4  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   3.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   4.5  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   6.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.0  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
 Frame = -2

Query: 276 TGCSTGGMRSSNVFLVSSFARSSLLQHSSLVPR--L*NNILPTLPSITFININKTMKIII 103
           +GCS G +R+++   +S+ + S L   SSL P     N+    LPS   + +N   ++I 
Sbjct: 155 SGCSIGPVRTNHSSSLSNSSNSLLQTESSLRPNSSFVNSPFFPLPSSDDLFLND--RVIN 212

Query: 102 ESKIYQKSLFMLDH-VNQFKSFD*LSFQACI 13
               Y+K  ++  H ++  KS D LS  + +
Sbjct: 213 LFLFYEKFSYLFTHLLSAIKSRDALSIPSLV 243


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 693 NYQIXGFG--RCIQELVSRFVTRLEHESENFPGPTMSLDTV 577
           NY   GF     +Q LVS       H  E+FP P+ SL ++
Sbjct: 423 NYPNLGFSANNSVQSLVSEIFRHPTHTDEDFPLPSPSLSSL 463


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -2

Query: 261 GGMRSSNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSI----TFININKTMKIIIESK 94
           G  +  N  LVS F +   L+ S  +  L  +++  LP I    T IN+ +T++ I + K
Sbjct: 66  GDFQGLNEQLVSLFKKHGQLKQS--MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGK 123

Query: 93  IY 88
           IY
Sbjct: 124 IY 125


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -2

Query: 261 GGMRSSNVFLVSSFARSSLLQHSSLVPRL*NNILPTLPSI----TFININKTMKIIIESK 94
           G  +  N  LVS F +   L+ S  +  L  +++  LP I    T IN+ +T++ I + K
Sbjct: 66  GDFQGLNEQLVSLFKKHGQLKQS--MTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGK 123

Query: 93  IY 88
           IY
Sbjct: 124 IY 125


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 437 ESMVKFHSSNALLLYQVMTVSVCALCRV 354
           +++V + +S+ LLL+ V  + + ALCR+
Sbjct: 19  DNVVVYSASDPLLLFIVQAIIIIALCRL 46


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 203 SKDDLAKLETRKT----FEDLMPPVLQPVEINSKYINDNLRYFRKAIKYVDNEVEPYRAR 370
           S DD ++LE+ KT       ++ P ++ +EI S   N+N +  ++ +  +  ++E +   
Sbjct: 43  SADDQSELESVKTQLLEMIRVVTPAIELIEIMSVGENENFKSTKQLVDSLHADIEQFTKH 102

Query: 371 IL 376
           +L
Sbjct: 103 VL 104


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 425  LPSIRFAYYAGYIPYRKARQMEEFFKEIKSYLNTGG 532
            +PS+       YIP R+ +Q + FF +I  +L   G
Sbjct: 924  VPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQRG 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,252
Number of Sequences: 5004
Number of extensions: 61158
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)