Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f23
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0837 - 23554013-23554771                                         28   2.2  
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377...    27   5.1  

>12_02_0837 - 23554013-23554771
          Length = 252

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 164 CSTFYQYQIQTQSAKGSLARLMALKPLIK-TEKRRDLTDH 280
           C TFY Y  +T  A+G  AR   L+ +++   K +D  DH
Sbjct: 184 CVTFYVYAARTAGARG-FARADELRAVVEAVAKLKDFLDH 222


>09_04_0020 +
           13837257-13837281,13837364-13837550,13837655-13837727,
           13837769-13837804,13838161-13838281,13838399-13838472,
           13838594-13838730,13839262-13839325,13839693-13839758,
           13840061-13840130,13840206-13840310,13840840-13840981,
           13841343-13841439,13841939-13842460
          Length = 572

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 230 ALKPLIKTEKRRDLTDHRYNQEKYYHVVVHSCV 328
           AL PL+  + R+ + DHR  +E+Y +  +  C+
Sbjct: 113 ALAPLMLEDYRKVMVDHRGEEEQYSYEDILRCM 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,120,092
Number of Sequences: 37544
Number of extensions: 104788
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)