Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f21
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    29   0.84 
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   5.9  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    26   5.9  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    26   5.9  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 490 DNMKQYILGMDIGTTSVKVCIYDYHTKEVIAN 585
           + +K  ++G+D+GTT+  + I +  T +VIAN
Sbjct: 46  EKVKGPVIGIDLGTTTSCLAIMEGQTPKVIAN 77


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 409 DTKLCTHISDFYTIKLELFFIYSFTMADNMKQYILGMDIGTTSVKVCIY 555
           + +LC  + +  T    +  + S T     K+ I+G+DIGT +   CIY
Sbjct: 44  ENRLCPMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLDIGTGA--SCIY 90


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 631 EGN--KQDVPKIVSAVHFCVSRL 693
           EGN  KQD+PK+++ V   +SRL
Sbjct: 783 EGNPDKQDIPKVINIVRGFLSRL 805


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 61  IIPTEKKQT*LLQRRYLHLVCKTEAN*KRYRKSNIHTT 174
           ++ T+  +T +++R YLH + K     KR++    H +
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVS 109


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 61  IIPTEKKQT*LLQRRYLHLVCKTEAN*KRYRKSNIHTT 174
           ++ T+  +T +++R YLH + K     KR++    H +
Sbjct: 72  VVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVS 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,672
Number of Sequences: 5004
Number of extensions: 57838
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)