Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f21
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.23 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.5  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 116 KCKYLR*SSHVCFFSVGIIFVRLDTSCDFFGRVSILL 6
           KC Y   SS+V F ++G  F+ +      +GR+S ++
Sbjct: 189 KCSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRISCVI 225


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 12  NGNPAKEIAASIQPYENNSN*KKTDMTTSTKIFT 113
           NG       A I P+EN SN       T TK+ T
Sbjct: 259 NGVRLSSARAFITPFENRSNLHVIVNATVTKVRT 292


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 364 TTAASVTL*FAYLPIDTKLC-THISDF-YTIK 453
           T  AS  +   Y P+D +LC   I  F YT++
Sbjct: 133 TITASCPMNLQYFPMDRQLCHIEIESFGYTMR 164


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 364 TTAASVTL*FAYLPIDTKLC-THISDF-YTIK 453
           T  AS  +   Y P+D +LC   I  F YT++
Sbjct: 133 TITASCPMNLQYFPMDRQLCHIEIESFGYTMR 164


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 377 PSLCDSLIYQLILSC 421
           P  C   IYQL+L C
Sbjct: 860 PMDCPEAIYQLMLDC 874


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 364 TTAASVTL*FAYLPIDTKLC-THISDF-YTIK 453
           T  AS  +   Y P+D +LC   I  F YT++
Sbjct: 72  TITASCPMNLQYFPMDRQLCHIEIESFGYTMR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,785
Number of Sequences: 438
Number of extensions: 4411
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)