Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f15
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.3  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    26   4.1  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.4  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   7.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.2  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   7.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   9.5  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   9.5  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   9.5  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 99  PNVLVIRKVTPRVFGVRRMDLLPPNQYKIPLPRK 200
           PN ++I +V P V  +RR D +  N YK+ L  K
Sbjct: 842 PNDILILEVAPFVRCMRRYDRIRLNSYKLLLSSK 875


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 190 NGILYWFGGNRSIRLTPKT 134
           +G L WFGGNRS   T  T
Sbjct: 2   SGFLRWFGGNRSKDTTKDT 20


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 227 NPHSVGQLQFPWQWNLILVRRQ*IH 153
           N HS+G L F   +N + V+RQ I+
Sbjct: 242 NEHSIGSLFFYLNYNFVNVKRQVIY 266


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 594 SNLLHNMDYKKRSTKENIDTHQK*VEKKTRID 499
           S + HN ++       N++T Q  +EKK  ID
Sbjct: 192 SRVAHNRNFSDGPIVTNLETDQPRIEKKLTID 223


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 385 TEGF-RRSIVLDILSRLCVE*TTSILFVKDQAIPKNNKVILNVDVSTSGM 239
           T GF R ++V+D L  +      ++   K  AI  ++ +  N DV+ SGM
Sbjct: 568 THGFVRLNVVMDALESMISTAQAAMQKAKQIAINFSSNLATNEDVTNSGM 617


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 137 NSRGNFSYYKHIRVYGSSGAP*LRYHFFSFTLFGSPVYFY 18
           NS  +    K+ R+  ++G    RY FF++ + GS V+++
Sbjct: 308 NSGNDIGVLKNNRI-SANGWTISRYRFFAYVMIGSFVFYW 346


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 66  SKLWRAAASIHPNVLVIRKVTPRVFGVRRMDLLPPNQYKIPLPRKLK 206
           S+LW   +   P+   I         V   D++PP    +P P+ LK
Sbjct: 296 SELWSEISDAGPDTNTINTAAKLSEPVYAKDIVPPPSDNLPKPQLLK 342


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 316 WMWSTQRTIATIYPELWTFGILP 384
           W W T+      Y + W  G+LP
Sbjct: 519 WNWDTENATQWSYKKSWLAGLLP 541


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 357 WIYCRDCALSR 325
           W+ CR CALSR
Sbjct: 507 WVVCRTCALSR 517


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 187 GILYWFGGNRSIRLTPK 137
           G+L W GGNR+  LT K
Sbjct: 359 GLLVWAGGNRARPLTKK 375


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 66  SKLWRAAASIHPNVLVIRKVTPRVFGVRRMDLLPPNQY 179
           S +W+   S   +V +I+K+  R   +  +  + P QY
Sbjct: 254 SDIWKDKDSFEAHVFMIKKIKERFPNLAYLHAIEPRQY 291


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 291 IAWSLTNKMDVVYSTHNRDNISRTMDLRN---PSVHKVMLVNQRYEP 422
           + WS+ + + +        N  RT+DLR+    ++  +++VN+  EP
Sbjct: 7   LLWSIISGLSLAEQVWRNSNAIRTIDLRSTYTKTLTSLIIVNEGDEP 53


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 587 YYTIWITRKEVQKKT*THIKNELK 516
           +YT+W  R ++   T ++I NEL+
Sbjct: 75  HYTVWAYRFQILNHTPSYIDNELE 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,726
Number of Sequences: 5004
Number of extensions: 60232
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)